Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQM67_RS07600 Genome accession   NZ_LS483383
Coordinates   1510599..1512095 (-) Length   498 a.a.
NCBI ID   WP_005591879.1    Uniprot ID   A0AAV3EEB4
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1505599..1517095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS07585 (NCTC12479_01474) amiF 1507660..1508586 (-) 927 WP_005591882.1 ATP-binding cassette domain-containing protein Regulator
  DQM67_RS07590 (NCTC12479_01475) amiE 1508597..1509664 (-) 1068 WP_005591881.1 ABC transporter ATP-binding protein Regulator
  DQM67_RS07595 (NCTC12479_01476) amiD 1509673..1510599 (-) 927 WP_005591880.1 oligopeptide ABC transporter permease OppC Regulator
  DQM67_RS07600 (NCTC12479_01477) amiC 1510599..1512095 (-) 1497 WP_005591879.1 ABC transporter permease Regulator
  DQM67_RS07605 (NCTC12479_01478) amiA3 1512161..1514137 (-) 1977 WP_005591878.1 peptide ABC transporter substrate-binding protein Regulator
  DQM67_RS07610 (NCTC12479_01479) - 1514278..1516032 (-) 1755 WP_005591877.1 glycerophosphodiester phosphodiesterase -
  DQM67_RS07615 (NCTC12479_01480) - 1516189..1516683 (-) 495 WP_005591876.1 DUF536 domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 56036.05 Da        Isoelectric Point: 9.7985

>NTDB_id=1139521 DQM67_RS07600 WP_005591879.1 1510599..1512095(-) (amiC) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MKKYIFMRILRSIVSIFLVTTLTYTIIYTMVPRRLIFKQDPNYNKIATTEDKKTNYENTVYERMGYIDYYDTKELQEKAK
KENKSVTTEATDENKKIYEAYVEKLGKGWKLYQFKESKEFYAVREVPVYERVLEFYANLIQIDHPNVIQDEENPNLKRYI
RIENDPAIGWSVVGSGTRHKYLLYFNGQFPFVHQNFVSLNLGNSYPTYANTPVLQVISQGQGQTKSSEVQFPTGKKTSAV
DIYSRTYKTPSKADSQDIAKYGKGDAYTATKNNYQNPSMIVSSSIIGLIGVALSYLIAVPLGSYMARLKNTWFDSISTGV
LTFMMSLPTIALVYIVRLAGSAIGLPDSFPILGAGDWRSYVLPSLILGLLSAPVTAVWIRRFMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVTNIPASIVGVIAGATLTETVFAFPGMGKMLIDSVRASNNSMVVGLVFIFTCLSIFALLVGD
ILMVMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1139521 DQM67_RS07600 WP_005591879.1 1510599..1512095(-) (amiC) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAAGAAATACATTTTTATGCGTATTTTACGCTCAATTGTGTCGATTTTCTTGGTAACGACCTTGACCTATACCATTAT
TTATACAATGGTTCCGAGAAGATTGATTTTCAAACAAGACCCGAACTACAATAAGATAGCCACAACCGAAGATAAAAAGA
CAAACTATGAAAATACAGTCTATGAGCGGATGGGTTATATTGATTATTATGATACAAAAGAGTTGCAGGAAAAAGCCAAG
AAGGAAAATAAATCTGTAACTACTGAGGCAACCGATGAAAATAAAAAGATCTACGAAGCCTATGTTGAAAAACTTGGTAA
AGGTTGGAAATTGTATCAATTCAAAGAAAGCAAAGAATTCTATGCTGTTCGTGAAGTTCCAGTTTACGAGCGTGTACTTG
AGTTCTATGCTAATCTGATTCAGATTGATCATCCAAATGTGATTCAAGATGAGGAAAATCCAAATCTTAAGCGCTATATC
CGTATCGAAAATGACCCGGCCATTGGTTGGTCAGTCGTAGGTTCTGGTACTCGTCATAAATATCTTCTATATTTCAATGG
CCAATTCCCATTTGTTCACCAAAACTTTGTTAGTTTGAACCTAGGAAATTCTTATCCTACTTATGCGAATACGCCTGTAT
TGCAAGTTATTTCCCAAGGACAAGGACAAACAAAATCATCAGAAGTTCAATTCCCAACAGGTAAGAAAACTTCTGCTGTA
GATATTTATTCTCGTACCTATAAGACTCCAAGTAAGGCAGACTCTCAAGATATTGCTAAATATGGCAAGGGAGATGCTTA
CACTGCAACCAAGAATAACTATCAAAACCCATCGATGATTGTCAGCTCATCTATTATTGGTCTGATTGGTGTGGCGCTTT
CTTATTTGATTGCTGTTCCGCTTGGTTCTTATATGGCTCGTTTGAAAAATACTTGGTTTGATAGTATTTCAACAGGTGTC
TTGACCTTCATGATGTCACTGCCAACTATCGCTCTTGTCTATATTGTTCGTTTGGCTGGTTCAGCTATTGGTCTTCCAGA
TTCCTTCCCAATTTTGGGAGCAGGCGACTGGCGTTCCTATGTTTTGCCATCTCTGATTCTTGGACTTCTGAGCGCACCTG
TGACAGCAGTTTGGATTCGTCGTTTTATGATCGACTTGCAATCTCAAGACTTTGTTCGCTTTGCTCGTGCTAAAGGTCTT
TCAGAGAAAGAAATTTCTAACAAGCATATTTTCAAAAATGCCATGGTACCATTGGTAACTAATATTCCAGCTTCTATCGT
TGGTGTCATTGCAGGTGCGACTCTGACAGAAACAGTCTTTGCCTTCCCTGGTATGGGTAAAATGTTGATTGACTCTGTGA
GGGCGTCTAATAACTCAATGGTGGTTGGCCTTGTGTTTATTTTCACCTGTCTTTCAATCTTTGCCCTCTTGGTAGGTGAT
ATCTTGATGGTAATGCTTGATCCACGTATTAAATTAACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.309

100

0.773
  amiC Streptococcus thermophilus LMD-9

77.108

100

0.771
  amiC Streptococcus thermophilus LMG 18311

77.108

100

0.771

Multiple sequence alignment