Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQM67_RS07595 Genome accession   NZ_LS483383
Coordinates   1509673..1510599 (-) Length   308 a.a.
NCBI ID   WP_005591880.1    Uniprot ID   A0A3R9L2Q1
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504673..1515599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS07580 (NCTC12479_01472) - 1505208..1507400 (-) 2193 WP_005591884.1 PTS transporter subunit IIBC -
  DQM67_RS07585 (NCTC12479_01474) amiF 1507660..1508586 (-) 927 WP_005591882.1 ATP-binding cassette domain-containing protein Regulator
  DQM67_RS07590 (NCTC12479_01475) amiE 1508597..1509664 (-) 1068 WP_005591881.1 ABC transporter ATP-binding protein Regulator
  DQM67_RS07595 (NCTC12479_01476) amiD 1509673..1510599 (-) 927 WP_005591880.1 oligopeptide ABC transporter permease OppC Regulator
  DQM67_RS07600 (NCTC12479_01477) amiC 1510599..1512095 (-) 1497 WP_005591879.1 ABC transporter permease Regulator
  DQM67_RS07605 (NCTC12479_01478) amiA3 1512161..1514137 (-) 1977 WP_005591878.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34743.78 Da        Isoelectric Point: 9.7486

>NTDB_id=1139520 DQM67_RS07595 WP_005591880.1 1509673..1510599(-) (amiD) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MATIDKSKFQFVKRDDFASETIDAPAYSYWRSVMRQFLKKKSTTIMLGILVAIVLMSFIYPMFSNFDFNDVSKVNDFSMR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISIIATLINLIIGIIIGAIWGISKAVDRVMMEVYNIISNIPALLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTYKIVTKNIMPQLVSVIVTTTSQMLPNFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1139520 DQM67_RS07595 WP_005591880.1 1509673..1510599(-) (amiD) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGGCTACAATTGATAAAAGTAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCTCCGGCGTA
TTCATACTGGCGCTCCGTTATGCGCCAGTTCTTGAAAAAGAAATCAACGACGATCATGTTAGGAATTCTGGTTGCCATCG
TTTTGATGAGTTTCATTTATCCAATGTTCTCAAATTTCGATTTCAATGATGTCAGCAAGGTAAATGACTTTAGTATGCGT
TATATCAAACCAAATGCTGAACACTGGTTTGGTACAGACAGTAATGGTAAATCGTTGTTTGACGGTGTTTGGTTTGGTGC
GCGGAATTCTATCTTGATTTCCATTATTGCAACACTCATTAACCTGATTATCGGAATTATTATTGGTGCTATCTGGGGAA
TTTCCAAAGCGGTTGACCGTGTCATGATGGAAGTCTACAATATCATTTCAAATATTCCAGCCCTCTTGATTGTCATTGTC
TTGACTTACTCTATCGGTGCTGGTTTCTGGAACTTGATCTTTGCCATGACCATCACTGGCTGGGTAGGGATTGCTTATAC
GATCCGTATTCAAATTATGCGTTATCGTGATTTGGAGTATAACTTGGCATCGCGTACCTTGGGAACACCGACATATAAGA
TTGTGACCAAGAATATCATGCCCCAGTTGGTATCTGTTATCGTGACGACAACTTCTCAAATGCTTCCAAACTTTATCTCT
TACGAGGCATTCCTATCCTTCTTTGGACTTGGTCTTCCTGTAACAGTACCAAGTTTGGGACGCTTGATTTCCGACTATTC
ACAAAACGTAACAACCAACGCTTACCTTTTCTGGATTCCATTGACAACCCTGATCTTGGTATCCCTGTCCTTCTTCGTAG
TTGGTCAAAACTTAGCCGATGCAAGTGATCCACGGACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9L2Q1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.39

100

0.854
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834

Multiple sequence alignment