Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQM67_RS07585 Genome accession   NZ_LS483383
Coordinates   1507660..1508586 (-) Length   308 a.a.
NCBI ID   WP_005591882.1    Uniprot ID   A0AAV3EE36
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502660..1513586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS07570 (NCTC12479_01470) liaF 1503458..1504153 (-) 696 WP_005591886.1 cell wall-active antibiotics response protein LiaF -
  DQM67_RS07575 (NCTC12479_01471) - 1504375..1505190 (-) 816 WP_005591885.1 endonuclease/exonuclease/phosphatase family protein -
  DQM67_RS07580 (NCTC12479_01472) - 1505208..1507400 (-) 2193 WP_005591884.1 PTS transporter subunit IIBC -
  DQM67_RS07585 (NCTC12479_01474) amiF 1507660..1508586 (-) 927 WP_005591882.1 ATP-binding cassette domain-containing protein Regulator
  DQM67_RS07590 (NCTC12479_01475) amiE 1508597..1509664 (-) 1068 WP_005591881.1 ABC transporter ATP-binding protein Regulator
  DQM67_RS07595 (NCTC12479_01476) amiD 1509673..1510599 (-) 927 WP_005591880.1 oligopeptide ABC transporter permease OppC Regulator
  DQM67_RS07600 (NCTC12479_01477) amiC 1510599..1512095 (-) 1497 WP_005591879.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34901.93 Da        Isoelectric Point: 5.9477

>NTDB_id=1139518 DQM67_RS07585 WP_005591882.1 1507660..1508586(-) (amiF) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDILYEGKKINGKQSKA
DEAELIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEDRQQKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDPEQHDYSVDQPSMVEIRPGHYVWANKAEVDRYKKEYK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1139518 DQM67_RS07585 WP_005591882.1 1507660..1508586(-) (amiF) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGCGAAGGAAGTAAGAAATTTGTAGCTGTTAAAAA
TGCAAATTTCTTTATCAATAAAGGAGAAACTTTTTCCCTAGTAGGTGAATCTGGTTCTGGTAAGACAACCATCGGCCGTG
CTATCATCGGCTTGAATGATACCAGTGCAGGTGACATCTTATACGAAGGCAAAAAAATCAACGGGAAGCAATCGAAAGCT
GATGAAGCTGAACTGATCCGTAAGATTCAGATGATTTTCCAAGACCCAGCTGCCAGCTTGAATGAGCGTGCTACGGTTGA
CTATATCATTTCAGAAGGTCTTTATAACTATCATCTTTTTGAGAATGAAGAAGACCGTCAGCAAAAGGTTAAGAATATCA
TTCGTGAAGTTGGTCTTTTAGCTGAGCATTTGACACGCTATCCTCATGAATTTTCTGGAGGTCAACGTCAGCGGATTGGG
ATTGCTCGTGCCTTGGTGATGGAGCCAGATTTCGTCATTGCGGATGAGCCAATCTCTGCCTTGGATGTTTCTGTACGTGC
ACAAGTCTTGAACCTTTTGAAAAAATTCCAAAAAGAACTTGGCTTGACCTATCTCTTTATCGCCCACGACCTATCGGTAG
TTCGCTTTATTTCAGATCGAATTGCTGTTATCTATAAAGGGGTTATCGTTGAGGTTGCAGAGACAGAAGAGTTGTTTAAC
AACCCAATCCACCCGTATACGCAGTCCCTTTTGTCTGCTGTGCCGATTCCAGACCCAATTCTGGAACGCAAAAAGGTCTT
AAAGGTTTACGATCCAGAGCAGCATGACTACTCAGTGGATCAACCTAGTATGGTTGAGATTCGTCCCGGACACTATGTCT
GGGCTAATAAGGCAGAAGTGGACCGTTATAAAAAAGAATATAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

84.967

99.351

0.844
  amiF Streptococcus thermophilus LMG 18311

84.314

99.351

0.838
  amiF Streptococcus thermophilus LMD-9

83.987

99.351

0.834

Multiple sequence alignment