Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQM54_RS08365 Genome accession   NZ_LS483375
Coordinates   1695381..1697339 (-) Length   652 a.a.
NCBI ID   WP_111724042.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1690381..1702339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS08355 (NCTC3165_01665) amiA 1690881..1692872 (-) 1992 WP_061582792.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08360 (NCTC3165_01666) amiA 1693149..1695131 (-) 1983 WP_111724041.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08365 (NCTC3165_01667) amiA3 1695381..1697339 (-) 1959 WP_111724042.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08370 (NCTC3165_01668) amiA 1697556..1699517 (-) 1962 WP_111724043.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08375 (NCTC3165_01669) pbp3 1699810..1701048 (+) 1239 WP_111724044.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72301.08 Da        Isoelectric Point: 5.0294

>NTDB_id=1139136 DQM54_RS08365 WP_111724042.1 1695381..1697339(-) (amiA3) [Streptococcus gordonii strain NCTC3165]
MNKKKRFVGVGLAVLSSVILAACSSTASNTKVYSYVYSSDPDSLDYVVANRATTSDVTGNLIDGLLENDKYGNLIPSLAE
DWTVSKDGLTYTYKLRKDAKWYTSDGEEYAEVKAQDFVTGLKHAADGKSEALYLVQNSIKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLNKPESYWNSKTTSGILFPINADFLASQGNSFGSAKPSSILYNGPYILKSLTAKSSIEYKKNENYWDKENV
PIEDVKLSYYDGSDQESLVRNFSDGAYTLARVFPNSSNYASVKKKYADNITYSQQGGTSFFYVFNVNRQSYNHTSKKDDK
KKSDTKAAILNKDFRQAIGFAFDRKAYAAQTNGEDGASMILRNLAVPPTFVQIKDRNFGDVVKEKLASYGQEWSDVKLED
AQDGLYNAEKAKTEFAKAKEALQAQGVNFPIHLDLPVSQSDKAGIQQASSFKQSVESALGKDNVVVDLQQMSEDDFNNTG
YFANSAAQKDYDLSTSGWTPDYQDPSTYLDVFDPTNGGLLQAIGIEPGQNQDVVSALGLNDYKALNDDANKETSDTSVRY
EKYANSQAWLTDSGLTLPSISNGANPLVQKSVPFTRAYSWIGSKGTATNYKYMQLQEDVLTSKDYEKAFKTWMKEKESSN
EKAQKELEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1139136 DQM54_RS08365 WP_111724042.1 1695381..1697339(-) (amiA3) [Streptococcus gordonii strain NCTC3165]
ATGAATAAGAAAAAAAGATTTGTTGGAGTTGGACTTGCAGTTTTATCTTCTGTGATTTTAGCTGCTTGTAGTTCAACAGC
ATCTAATACAAAGGTGTATTCTTATGTATATAGTAGTGATCCAGATTCTTTGGACTATGTAGTTGCTAATCGTGCTACCA
CTTCAGATGTTACTGGAAATCTGATTGATGGTTTGCTTGAAAATGATAAGTATGGGAATTTGATTCCGTCTCTTGCTGAA
GATTGGACCGTATCTAAGGATGGTTTGACCTATACTTACAAGCTTCGAAAAGATGCTAAGTGGTATACCTCAGATGGCGA
AGAGTATGCTGAGGTAAAAGCTCAAGATTTTGTGACAGGATTGAAGCACGCAGCCGATGGCAAATCTGAAGCTCTTTACC
TTGTTCAAAATTCTATCAAAGGATTGGATGCCTATATCAAAGGGGAAACTAAAGACTTTTCTACTGTAGGTGTAAAAGCA
CTGGATGATTATACAGTGCAGTATACTTTGAATAAGCCAGAAAGTTACTGGAATTCGAAGACGACTAGTGGTATCTTATT
CCCGATAAATGCTGATTTCTTAGCTTCCCAAGGAAATAGTTTTGGCTCAGCTAAACCGTCTAGTATTTTGTACAATGGTC
CTTATATTTTGAAGTCTTTAACGGCAAAATCTTCTATTGAATATAAGAAAAACGAAAATTATTGGGATAAAGAAAATGTT
CCGATTGAAGATGTAAAACTGTCTTATTATGATGGATCTGATCAAGAATCCTTAGTTCGTAATTTTAGCGATGGTGCCTA
TACCCTGGCTCGTGTATTCCCAAATAGTTCGAACTATGCCTCTGTTAAAAAGAAATATGCGGATAATATTACCTATTCTC
AACAAGGTGGAACTTCATTTTTCTATGTCTTTAATGTAAATCGCCAGTCTTATAATCATACTTCTAAGAAAGATGACAAG
AAAAAATCAGATACCAAGGCTGCTATTTTAAACAAAGATTTCCGTCAGGCAATCGGTTTTGCTTTTGACCGAAAAGCTTA
CGCAGCTCAAACGAATGGCGAAGACGGAGCATCAATGATCTTGCGCAACCTTGCAGTGCCGCCGACATTTGTGCAGATTA
AGGATCGGAATTTTGGAGATGTCGTGAAAGAAAAACTAGCGAGCTACGGTCAAGAGTGGTCTGATGTCAAGTTAGAGGAT
GCCCAAGACGGTCTGTATAATGCTGAAAAAGCTAAAACAGAGTTTGCAAAAGCTAAAGAAGCGCTACAGGCTCAAGGTGT
GAATTTCCCAATTCATCTAGATTTGCCAGTGAGTCAGTCTGATAAGGCTGGAATTCAACAAGCTAGTTCCTTTAAGCAGT
CTGTTGAGTCAGCTCTAGGAAAAGATAATGTGGTAGTTGATCTTCAGCAAATGTCCGAAGACGACTTTAATAATACGGGT
TATTTTGCTAACTCAGCCGCTCAAAAAGATTATGATCTTTCAACCAGTGGTTGGACTCCTGATTATCAAGATCCTTCTAC
ATATCTAGATGTTTTTGATCCGACAAATGGTGGATTGCTACAAGCAATTGGAATTGAACCAGGTCAAAATCAAGATGTTG
TGTCAGCTCTAGGATTAAATGATTATAAAGCTCTGAATGATGATGCAAATAAGGAAACGTCTGATACGAGTGTGCGTTAT
GAAAAATATGCAAATTCTCAAGCATGGTTGACAGATAGTGGTTTGACCCTTCCAAGTATCTCAAACGGTGCTAATCCGCT
GGTTCAAAAATCAGTTCCATTTACTAGAGCCTACTCTTGGATTGGAAGCAAGGGGACTGCTACAAATTATAAATACATGC
AACTTCAAGAGGATGTTTTGACATCTAAGGATTATGAGAAGGCATTTAAAACCTGGATGAAAGAAAAAGAATCATCTAAT
GAAAAAGCTCAAAAAGAGTTAGAAAAACATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.056

100

0.595
  amiA Streptococcus salivarius strain HSISS4

58.994

100

0.594
  amiA3 Streptococcus thermophilus LMG 18311

58.752

100

0.592

Multiple sequence alignment