Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM54_RS08360 Genome accession   NZ_LS483375
Coordinates   1693149..1695131 (-) Length   660 a.a.
NCBI ID   WP_111724041.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1688149..1700131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS08345 (NCTC3165_01663) amiD 1688394..1689320 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  DQM54_RS08350 (NCTC3165_01664) amiC 1689320..1690816 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  DQM54_RS08355 (NCTC3165_01665) amiA 1690881..1692872 (-) 1992 WP_061582792.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08360 (NCTC3165_01666) amiA 1693149..1695131 (-) 1983 WP_111724041.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08365 (NCTC3165_01667) amiA3 1695381..1697339 (-) 1959 WP_111724042.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08370 (NCTC3165_01668) amiA 1697556..1699517 (-) 1962 WP_111724043.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73274.64 Da        Isoelectric Point: 5.1410

>NTDB_id=1139135 DQM54_RS08360 WP_111724041.1 1693149..1695131(-) (amiA) [Streptococcus gordonii strain NCTC3165]
MKKRNVLAMAGVTLLAVGVLAACSSSKSGSSNTNTNFTYVYQTDPETLDYTLSGKTSTHDITSNVIDGLLENDQYGNLVP
SIAEDWSVSKDGLTYTYKLRKNAKWYTSDGEEYADVTAKDFVTGLKHAVDKKSEALYMVENSIKGLAAYAKGETKDFSTV
GIKAVDDHTLQFTLEHPESFWNSKLTMGILFPVNEEFLKSKGDKFGQATDPSSILYNGPFLLKSVTSKSSIEFAKNPNYW
DKDNVHVDNVKLAFYDGQDQESLIRGFKDGSYSKARVYPRSSNYASVEKEYKDNIIFSPQGSSSFVVFTNIDRQSYNHTS
KSTDAQKSSTKKAILNKDFRQALNFAYDRKAYSDQVNGEEGALKSVRNLYVPPTFVQVGDKNFGDVVKEDVVKYGDEWKD
VDFSDATNGLYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPAIQTNTLGVKRVQSMKQSIEKSLGTDNVVVDIQMLSQED
VQNITYYAPNAAALDWDITDQLGWTPDFQDPSSYLEILHPETGDNTKSFLGFEAGSGNAAAKQIGMDEFGKLLDEAAAEK
TDTTKRYEKYAAAQAWLTDSSILLPSGSNGGGAGVTKVVPFTTPFGWTGNKSDGSVLYKYIKLQDKPVTKKEYQEAEKKW
IKEKEESNKKAQEELEKHIK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1139135 DQM54_RS08360 WP_111724041.1 1693149..1695131(-) (amiA) [Streptococcus gordonii strain NCTC3165]
ATGAAGAAACGCAATGTTTTAGCCATGGCTGGTGTTACTTTACTTGCTGTTGGTGTCTTAGCTGCCTGCTCTAGTTCTAA
GTCTGGATCATCAAACACAAATACTAATTTTACTTATGTTTATCAAACAGACCCAGAAACTTTGGACTATACCTTGTCAG
GTAAGACCTCTACCCATGATATCACATCGAATGTCATTGACGGTTTGTTGGAAAATGACCAATATGGTAATCTTGTTCCT
TCTATCGCGGAGGACTGGAGTGTATCTAAGGATGGCCTGACTTACACTTACAAATTGCGTAAGAACGCAAAATGGTACAC
ATCTGATGGTGAAGAGTATGCAGATGTGACTGCTAAGGACTTTGTGACAGGTTTGAAACATGCTGTAGATAAGAAGTCAG
AAGCTCTTTACATGGTAGAAAATTCTATCAAAGGATTGGCTGCTTATGCAAAAGGGGAAACAAAGGACTTCTCAACGGTA
GGAATTAAAGCTGTCGATGATCATACTTTACAATTTACCTTGGAACACCCAGAAAGCTTCTGGAATTCTAAATTAACAAT
GGGTATCTTATTCCCTGTTAATGAAGAGTTCTTGAAATCTAAAGGTGACAAGTTCGGTCAAGCTACAGATCCATCAAGTA
TCCTTTATAATGGACCATTCTTGTTGAAAAGCGTAACTTCGAAGTCCTCTATCGAGTTTGCGAAAAATCCAAACTATTGG
GATAAAGACAATGTCCATGTAGACAATGTTAAATTAGCTTTCTATGATGGGCAAGACCAAGAATCTCTAATTCGTGGCTT
TAAAGATGGCTCTTATAGCAAGGCGCGTGTTTATCCTCGTAGTTCAAACTATGCATCTGTAGAAAAAGAATATAAAGACA
ATATTATCTTTAGTCCTCAAGGATCATCCTCCTTTGTAGTTTTCACAAACATTGATCGCCAAAGTTACAACCATACCTCT
AAATCGACAGATGCTCAAAAATCATCTACCAAAAAAGCTATCTTAAACAAAGATTTCCGTCAAGCTTTGAACTTTGCTTA
TGACCGCAAGGCCTATTCTGACCAAGTGAACGGTGAAGAAGGAGCCCTTAAATCTGTTCGTAACCTCTATGTCCCACCAA
CATTTGTTCAAGTTGGTGACAAGAATTTTGGAGATGTCGTAAAAGAAGATGTTGTCAAATACGGCGATGAGTGGAAAGAT
GTTGATTTCTCAGATGCGACTAACGGTCTCTACAATCCAGAGAAAGCCAAAGCGGAATTCGCCAAAGCAAAAGAAGCCCT
TCAAGCAGAAGGTGTAGAATTCCCAATTCATCTGGATATTCCAGCGATCCAAACCAACACTCTTGGCGTTAAACGTGTTC
AATCAATGAAACAGTCTATTGAAAAGAGTTTAGGGACAGACAACGTTGTAGTTGATATTCAAATGCTATCTCAAGAAGAT
GTTCAGAACATCACTTACTACGCTCCAAATGCAGCTGCTTTGGATTGGGATATTACAGACCAACTTGGCTGGACTCCTGA
CTTCCAAGATCCGTCATCCTACTTAGAGATTCTACACCCAGAAACAGGTGATAACACGAAGTCTTTCCTTGGATTTGAAG
CTGGTAGTGGAAATGCTGCTGCTAAACAAATCGGCATGGATGAATTTGGGAAATTGTTGGATGAAGCTGCTGCTGAAAAG
ACAGATACAACGAAACGCTACGAAAAATATGCAGCTGCTCAAGCTTGGTTGACAGATAGTTCAATTCTACTCCCAAGTGG
TTCTAACGGTGGTGGAGCAGGCGTTACTAAAGTTGTTCCATTCACGACTCCATTTGGTTGGACTGGTAACAAATCGGATG
GATCTGTTCTCTACAAATACATCAAGCTTCAAGATAAACCAGTAACGAAGAAAGAGTATCAAGAAGCTGAGAAGAAATGG
ATTAAAGAAAAAGAAGAATCTAACAAAAAAGCTCAAGAAGAACTTGAGAAGCATATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

59.758

100

0.598
  amiA3 Streptococcus thermophilus LMD-9

59.455

100

0.595
  amiA3 Streptococcus thermophilus LMG 18311

59.002

100

0.591

Multiple sequence alignment