Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM54_RS08370 Genome accession   NZ_LS483375
Coordinates   1697556..1699517 (-) Length   653 a.a.
NCBI ID   WP_111724043.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692556..1704517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS08360 (NCTC3165_01666) amiA 1693149..1695131 (-) 1983 WP_111724041.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08365 (NCTC3165_01667) amiA3 1695381..1697339 (-) 1959 WP_111724042.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08370 (NCTC3165_01668) amiA 1697556..1699517 (-) 1962 WP_111724043.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08375 (NCTC3165_01669) pbp3 1699810..1701048 (+) 1239 WP_111724044.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM54_RS08380 (NCTC3165_01670) sufB 1701455..1702867 (-) 1413 WP_008809630.1 Fe-S cluster assembly protein SufB -
  DQM54_RS08385 (NCTC3165_01671) sufU 1702885..1703322 (-) 438 WP_111724045.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72686.89 Da        Isoelectric Point: 4.9834

>NTDB_id=1139137 DQM54_RS08370 WP_111724043.1 1697556..1699517(-) (amiA) [Streptococcus gordonii strain NCTC3165]
MKPVKKLAVLGLTLASVFTLAACGNSNSGASKTYSYVYSTDPDTLDYTNTNRSTTSDVIANLVDGLLENDRYGNLVPSLA
EDWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADSNSDALPIVQSSIKGLDAYVKGESKDFSTVGVK
AVDDYTVQYTLNKPESYWNSKTTMGILFPINEEFLKSSGKDFGTVKPSGILYNGPYFLKSFTSKSSIEYTKNDNYWDKNN
VKISDVKLTYFDGSDQEALVRNFKDGTYTQARLYPNSSSYASVQKQYKDNIVYSPQDASSFFYAFNYNRKAYNFTAKTTD
AQKTSTTAALLNKDFRQAINFAFNRTVYGAQQNGQEGATSSLRNSLVPPTFVQIGEKNFGDIVEKDLVSYGDEWKGVKLD
DAQDGLFNVEKAKAEFAKAKEALQAQGVEFPIHLDLPVEQTNNLLVQQANSFKQSVEEALGKDNVVIDVQQMSTENKNNV
TYFAETAAQKDYDINIAGWGPDFQDPSTYLNIFDPDKGDMLQNIGLEKGQNADLADKLGLNEFKKLNEEADSEKQDTTAR
YTKYAAAQAWLTDSSLVIPIQSNGGSPLVMKAVPFTKPYSLVGIKGDVYVFKYREVQNDIVTAKDYKAAEKKWKKEKEKS
NAKAQEELADHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1139137 DQM54_RS08370 WP_111724043.1 1697556..1699517(-) (amiA) [Streptococcus gordonii strain NCTC3165]
ATGAAACCAGTGAAAAAATTAGCTGTTTTAGGGCTAACGCTTGCTTCTGTTTTTACCTTAGCGGCATGTGGAAATTCTAA
CTCAGGGGCTTCAAAGACTTATTCTTATGTCTATTCAACAGACCCAGATACCTTGGATTATACAAATACTAATCGTTCAA
CTACGTCTGATGTTATTGCAAACTTAGTGGATGGACTATTAGAAAATGATAGATACGGAAATCTTGTGCCATCTCTGGCA
GAAGATTGGACAGTGTCGAAAGATGGTTTGACTTATACATATAAGCTTCGGAAGGGTGCTAAATGGTACACTTCTGAGGG
TGAAGAATATGCAGAAGTCAAAGCACAGGACTTTGTTACTGGTTTGAAGCACGCGGCTGACAGCAATTCAGATGCGCTTC
CAATTGTTCAAAGCTCTATCAAAGGCTTGGATGCTTATGTAAAAGGTGAAAGTAAGGATTTCTCAACAGTTGGAGTTAAG
GCGGTTGACGATTACACAGTCCAATATACACTCAACAAGCCAGAAAGTTATTGGAATTCTAAAACCACAATGGGTATTCT
TTTCCCAATTAACGAAGAATTTTTAAAATCATCTGGTAAAGATTTCGGTACCGTAAAACCTTCAGGAATTCTCTATAACG
GTCCATATTTCCTGAAGTCCTTCACATCGAAATCATCTATTGAATATACAAAAAATGACAACTATTGGGATAAGAACAAT
GTGAAGATTTCAGACGTCAAGTTGACCTACTTTGATGGTTCTGATCAAGAAGCGCTTGTTCGTAACTTTAAAGATGGTAC
ATATACACAAGCTCGTTTGTATCCAAATAGTTCAAGTTATGCTTCGGTGCAAAAACAATACAAAGACAATATTGTATACT
CTCCTCAAGATGCATCATCATTCTTTTACGCCTTTAACTACAACCGTAAAGCCTACAATTTTACAGCCAAGACAACAGAT
GCTCAAAAGACATCTACAACAGCTGCTCTCTTAAATAAAGATTTCCGTCAGGCTATCAACTTCGCTTTCAATCGGACAGT
TTATGGAGCTCAGCAAAACGGTCAAGAGGGAGCAACTAGCTCACTTAGAAATAGCTTAGTACCGCCAACATTCGTTCAGA
TTGGTGAAAAGAACTTCGGAGATATAGTTGAGAAAGATTTGGTGAGCTATGGTGATGAGTGGAAGGGTGTTAAGTTGGAC
GATGCTCAGGATGGACTCTTTAATGTTGAGAAAGCTAAGGCAGAATTTGCCAAAGCAAAAGAAGCTCTCCAAGCACAAGG
TGTTGAATTCCCGATTCACTTAGATCTTCCTGTTGAACAAACAAACAACCTCTTGGTACAGCAGGCTAATTCATTTAAAC
AATCAGTTGAAGAAGCCCTTGGTAAAGATAATGTTGTTATTGATGTACAGCAAATGTCTACAGAAAATAAAAATAATGTA
ACGTACTTTGCGGAGACTGCGGCTCAAAAAGACTACGATATCAACATTGCTGGTTGGGGTCCTGACTTCCAAGATCCATC
AACTTATTTGAATATTTTTGATCCAGATAAAGGAGATATGCTCCAAAATATCGGTTTGGAAAAAGGACAAAATGCTGATT
TAGCAGACAAACTGGGCTTGAACGAATTTAAGAAATTAAATGAAGAGGCAGATTCTGAAAAACAAGATACAACTGCTCGC
TATACAAAATATGCAGCAGCTCAAGCTTGGTTAACAGATAGCTCTTTGGTCATTCCGATTCAATCAAACGGTGGTAGTCC
GCTTGTTATGAAGGCAGTTCCGTTCACAAAACCTTACTCTCTGGTTGGTATCAAAGGTGATGTTTACGTCTTTAAGTACA
GAGAAGTTCAAAATGACATTGTAACGGCGAAAGACTACAAAGCCGCTGAGAAAAAATGGAAGAAAGAAAAAGAAAAATCA
AATGCCAAAGCTCAAGAAGAATTGGCTGATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.23

100

0.576
  amiA3 Streptococcus thermophilus LMD-9

56.146

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.565

Multiple sequence alignment