Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQM54_RS08350 Genome accession   NZ_LS483375
Coordinates   1689320..1690816 (-) Length   498 a.a.
NCBI ID   WP_008809624.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684320..1695816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS08330 (NCTC3165_01660) comR/comR2 1685700..1686182 (-) 483 WP_045772576.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQM54_RS08335 (NCTC3165_01661) amiF 1686384..1687307 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  DQM54_RS08340 (NCTC3165_01662) amiE 1687318..1688385 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  DQM54_RS08345 (NCTC3165_01663) amiD 1688394..1689320 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  DQM54_RS08350 (NCTC3165_01664) amiC 1689320..1690816 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  DQM54_RS08355 (NCTC3165_01665) amiA 1690881..1692872 (-) 1992 WP_061582792.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08360 (NCTC3165_01666) amiA 1693149..1695131 (-) 1983 WP_111724041.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55567.53 Da        Isoelectric Point: 9.9197

>NTDB_id=1139133 DQM54_RS08350 WP_008809624.1 1689320..1690816(-) (amiC) [Streptococcus gordonii strain NCTC3165]
MKKYIFMRILRSLVSIFLVTALTYTIIYTMVPRKLIFKQDPNYNKIATTKDKKANYENTIYERMGYVDYYDTKELQEKAS
KEDSSVTVEGTDANKKIYEAYIKKLGNGWKLHQFEESKQFYAVREVPVLERVLGFYGNLIQFDHTGFVKDETNPKLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNAQFPFVHQNFVTLNLGNSYPTYANIPVLQVISQGQGQTKSSEVQFPTGKKTSSV
NIYSRTYKSPSKADSRDIANYGKDDPYTATESNYQYPSMLVSSAIIGLIGIAISYLIAVPLGSYMARFKNTWIDSSLTGL
LTFLLALPTIALVYIIRLGGSSVGLPDSFPVLGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIQGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTGLSVFALLLGD
ILMTMLDPRIKLTTKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1139133 DQM54_RS08350 WP_008809624.1 1689320..1690816(-) (amiC) [Streptococcus gordonii strain NCTC3165]
ATGAAGAAATATATATTTATGCGTATCTTACGCTCCCTGGTGTCGATTTTCTTAGTAACGGCTTTGACCTATACCATTAT
TTATACTATGGTGCCAAGAAAATTGATTTTTAAACAGGACCCTAACTATAACAAGATAGCAACCACAAAAGATAAAAAAG
CCAATTACGAAAACACAATCTATGAACGTATGGGCTATGTGGATTATTATGATACGAAAGAGTTACAGGAGAAAGCTAGC
AAGGAAGATAGCTCTGTAACTGTTGAAGGAACTGATGCAAACAAAAAAATCTACGAAGCTTATATCAAAAAATTAGGTAA
TGGCTGGAAGCTTCACCAATTTGAAGAAAGCAAGCAGTTTTATGCTGTTCGTGAGGTGCCAGTTCTGGAACGTGTTCTTG
GCTTCTACGGGAATTTGATTCAATTTGACCATACTGGTTTTGTCAAAGATGAAACGAATCCAAAACTTAAACGTTATATT
CGTATTGAAAACGACCCTGCTATTGGTTGGTCTGTAGTTGGATCAGGGACTAAGCATAAATATTTACTATACTTTAATGC
TCAATTTCCGTTTGTTCATCAAAATTTTGTGACCTTGAACTTAGGAAATTCTTACCCAACTTATGCAAATATTCCTGTGT
TACAGGTTATTTCACAAGGGCAAGGACAAACTAAATCATCTGAGGTTCAATTCCCTACAGGAAAGAAAACTTCATCAGTT
AATATCTATTCACGTACTTACAAGTCACCAAGTAAAGCTGATTCGCGAGATATTGCAAACTATGGAAAAGATGATCCATA
TACAGCTACAGAGAGCAACTATCAATATCCATCCATGCTTGTTAGCTCAGCAATTATTGGTTTGATTGGTATTGCGATCT
CTTATCTGATTGCTGTCCCATTAGGATCTTACATGGCTCGCTTCAAAAACACTTGGATTGATAGTTCATTAACAGGTCTC
TTGACCTTCCTTTTGGCCCTGCCAACAATTGCCTTAGTTTATATTATTCGCTTAGGTGGTTCTTCGGTTGGTCTTCCAGA
TTCTTTCCCAGTTCTTGGTGCAGGAGACTGGCGTTCGTATGTTCTTCCGGCAGTTATTCTGGGACTTTTGGGGGCGCCAA
GCACAGCTATCTGGATTCGTCGTTATATGATCGACTTGCAATCCCAAGACTTTGTACGTTTTGCCCGGGCTAAAGGATTA
TCTGAAAAAGAAATTTCAAATAAACACATTTTCAAAAATGCCATGGTTCCATTGGTATCAGGAATTCCAGGAGCCGTTAT
CGGAGTTATTCAAGGGGCAACCTTGACAGAGACTGTCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCAGTTA
AAGCTTCAAATAATTCTATGGTAGTCGGATTGGTCTTCATTTTCACTGGTTTATCAGTCTTTGCCTTACTCTTAGGTGAT
ATTTTGATGACAATGCTTGACCCACGTATTAAATTAACAACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

79.116

100

0.791
  amiC Streptococcus thermophilus LMG 18311

78.514

100

0.785
  amiC Streptococcus thermophilus LMD-9

78.313

100

0.783

Multiple sequence alignment