Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQM54_RS08335 Genome accession   NZ_LS483375
Coordinates   1686384..1687307 (-) Length   307 a.a.
NCBI ID   WP_012130756.1    Uniprot ID   A0AAQ2V108
Organism   Streptococcus gordonii strain NCTC3165     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681384..1692307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS08330 (NCTC3165_01660) comR/comR2 1685700..1686182 (-) 483 WP_045772576.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQM54_RS08335 (NCTC3165_01661) amiF 1686384..1687307 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  DQM54_RS08340 (NCTC3165_01662) amiE 1687318..1688385 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  DQM54_RS08345 (NCTC3165_01663) amiD 1688394..1689320 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  DQM54_RS08350 (NCTC3165_01664) amiC 1689320..1690816 (-) 1497 WP_008809624.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34922.14 Da        Isoelectric Point: 6.7109

>NTDB_id=1139130 DQM54_RS08335 WP_012130756.1 1686384..1687307(-) (amiF) [Streptococcus gordonii strain NCTC3165]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSKGEIFFDGKQINGKKSRK
ESSEIIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEERIQKVKNIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPDQHDYSVEKPEMVEIKPGHFVWANKTEVENYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1139130 DQM54_RS08335 WP_012130756.1 1686384..1687307(-) (amiF) [Streptococcus gordonii strain NCTC3165]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTTGGTGAAGGGAAGAAGAAATTTGTAGCTGTTAAAAA
TGCAAATTTCTTTATTAATAGAGGAGAAACTTTCTCACTCGTAGGTGAATCCGGCTCAGGGAAAACTACAATCGGTCGCG
CAATCATTGGTTTGAATGAGACGAGTAAAGGTGAAATCTTCTTTGATGGAAAGCAGATTAATGGGAAGAAGTCTAGAAAA
GAATCTTCGGAAATTATTCGTAAGATTCAAATGATATTCCAGGATCCTGCTGCGAGCTTAAACGAGCGTGCAACAGTTGA
CTATATCATTTCTGAGGGCTTGTACAACTATCACTTGTTTGAAAATGAAGAAGAAAGAATACAAAAGGTTAAAAATATTA
TTCATGAAGTTGGATTGCTTTCCGAACATTTGACGCGTTATCCGCATGAATTTTCAGGAGGACAACGTCAACGTATTGGG
ATAGCGCGCGCTTTAGTCATGCAACCAGATTTCGTTATTGCTGATGAACCAATTTCTGCTTTGGATGTATCCGTTCGTGC
TCAAGTCCTAAACCTTCTAAAGAAATTTCAAAAAGAGTTGGGGTTAACCTATCTATTCATCGCTCACGATTTGTCAGTGG
TACGCTTCATTTCAGATCGTATCGCAGTTATCTATAAAGGTGTTATTGTTGAAGTTGCTGAAACAGAAGAGCTCTTTAAC
AATCCAATTCATCCTTATACCAAATCGTTATTATCAGCTGTTCCAATTCCAGATCCAATCTTGGAGCGTAAAAAAGTACT
TAAAGTTTACGATCCGGATCAACATGACTATTCAGTTGAAAAACCTGAAATGGTTGAAATTAAACCTGGCCACTTTGTTT
GGGCTAACAAAACTGAAGTAGAGAACTATAAAAAAGAACTCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86
  amiF Streptococcus salivarius strain HSISS4

85.621

99.674

0.853

Multiple sequence alignment