Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM54_RS08355 Genome accession   NZ_LS483375
Coordinates   1690881..1692872 (-) Length   663 a.a.
NCBI ID   WP_061582792.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685881..1697872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS08335 (NCTC3165_01661) amiF 1686384..1687307 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  DQM54_RS08340 (NCTC3165_01662) amiE 1687318..1688385 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  DQM54_RS08345 (NCTC3165_01663) amiD 1688394..1689320 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  DQM54_RS08350 (NCTC3165_01664) amiC 1689320..1690816 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  DQM54_RS08355 (NCTC3165_01665) amiA 1690881..1692872 (-) 1992 WP_061582792.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08360 (NCTC3165_01666) amiA 1693149..1695131 (-) 1983 WP_111724041.1 peptide ABC transporter substrate-binding protein Regulator
  DQM54_RS08365 (NCTC3165_01667) amiA3 1695381..1697339 (-) 1959 WP_111724042.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 73311.72 Da        Isoelectric Point: 5.0825

>NTDB_id=1139134 DQM54_RS08355 WP_061582792.1 1690881..1692872(-) (amiA) [Streptococcus gordonii strain NCTC3165]
MKKGKILTLAGVALLATGVLAACSNSTSNSSNSSSSGADQAFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLENDNY
GNLVPSMAEDWTVSKDGLTYTYKLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNGKTK
DFSSVGVKAVDDHTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQAADPTSLLYNGPFLLKSITSKSSIEFAK
NPNYWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSATFSKVEKEFKDNIVYTPQDSSSYLVGVNIDRQA
YNHTAKSSDAQKSSTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVASYG
DEWKDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTASAKVQRVQSLKQSIESSLGTDNVVVDIHQ
MKTDDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAADQVGLKEYAKLVDEAA
AEKTDVNKRYEKYAAAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMASYKYLKLQDKAVTAKEYQKAQ
EKWNKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=1139134 DQM54_RS08355 WP_061582792.1 1690881..1692872(-) (amiA) [Streptococcus gordonii strain NCTC3165]
ATGAAGAAAGGTAAAATCCTTACACTTGCGGGAGTCGCTCTCTTGGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACTCATCAAACTCATCAAGCTCTGGCGCAGATCAAGCTTTTAACTATATCTACGAAGTTGATCCAGAAAACTTGA
ATTATTTGATCTCTAGTAAAGCAGCAACAACTGACCTTACAGCTAACTTGATTGATGGTCTTTTGGAAAATGACAACTAT
GGAAACTTGGTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATAAACTTCGTAAGGA
TGCTAAATGGTATACTTCTGATGGTGAAGAATATGCTGATGTCAAGGCACAAGACTTTGTGGCAGGTCTAAAGTACGCTG
CTGACAACAAGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGTAAAACAAAG
GATTTCTCATCAGTTGGTGTTAAAGCAGTTGATGACCACACAGTTCAATATACTTTAAATGAGCCAGAAAGTTTCTGGAA
CTCTAAAACAACAATGGGTATACTTTATCCAGTCAATGAAGAGTTCTTGAAGTCTAAAGGCGACAAGTTTGCTCAAGCTG
CTGACCCAACTAGTCTTCTATACAACGGGCCATTCCTACTAAAATCTATCACATCTAAATCATCTATTGAATTTGCTAAA
AATCCAAATTATTGGGATAAAGATAATGTCCATGTGAGCGATGTTAAATTAACATACTTTGACGGGCAAGATCAAGGTAA
ACCAGCTGAGCAATTTGCTAAAGGTGCTCTAAGTGCGGCTAGACTGGCTCCTACAAGTGCTACCTTCTCTAAAGTAGAAA
AAGAATTCAAAGATAATATCGTTTATACTCCTCAAGATTCTTCAAGCTATTTAGTTGGGGTGAACATTGATCGTCAAGCG
TACAATCACACAGCTAAGTCAAGTGATGCACAAAAATCATCAACAAAGAAAGCTTTGATGAATAAAGATTTCCGTCAAGC
TTTGAGTTTTGCATTCGACAGAACGGCTTATGCTTCACAAGTTAACGGTAAAGAAGGGGCTACGAAAATGCTCCGCAATC
TCTACATTCCACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGCGAACTTGTGAAAGAAAAAGTGGCTAGCTATGGA
GATGAGTGGAAAGATGTAAACTTCGACGATGCTCAAGATGGTCTTTACAATAAAGAAAAAGCTAAAGCTGAATTTGCGAA
AGCTAAAAAAGCTCTCCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTGCTAGTGCTA
AAGTTCAGCGTGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGACAATGTGGTTGTTGACATTCATCAA
ATGAAGACTGATGATGTTTTGAACATCACATATTATGCTGCTTCAGCTGCTGAAGAAGACTGGGACATTTCTGATAATGT
TGGTTGGTCTCCTGACTATCAAGACCCATCGACTTATCTTGAAATTATCAAGCCTGGCGGTGAAAACACCAAAACATTCT
TAGGGTTTGATGGTAAAGAAAATGCAGCTGCAGACCAAGTTGGTTTGAAGGAGTATGCTAAGCTAGTTGATGAAGCTGCC
GCTGAAAAGACAGATGTAAATAAACGCTATGAAAAATATGCAGCCGCTCAAGCATGGCTAACAGATAGCGCCTTGTTGAT
ACCAACAACAAGTAGGACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGTCTGGTGCTA
AAGGTCGTGACATGGCAAGTTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAAGAATATCAGAAAGCTCAA
GAAAAATGGAATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(83-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.301

100

0.605
  amiA3 Streptococcus thermophilus LMD-9

59.549

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

59.098

100

0.593

Multiple sequence alignment