Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DQM54_RS07950 Genome accession   NZ_LS483375
Coordinates   1610515..1611132 (-) Length   205 a.a.
NCBI ID   WP_256262209.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605515..1616132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS07925 (NCTC3165_01579) - 1606163..1606927 (-) 765 WP_008809554.1 ABC transporter ATP-binding protein -
  DQM54_RS07930 (NCTC3165_01580) - 1606927..1607880 (-) 954 WP_060554126.1 branched-chain amino acid ABC transporter permease -
  DQM54_RS07935 (NCTC3165_01581) - 1607884..1608753 (-) 870 WP_008809556.1 branched-chain amino acid ABC transporter permease -
  DQM54_RS07940 (NCTC3165_01582) - 1608912..1610078 (-) 1167 WP_060554125.1 ABC transporter substrate-binding protein -
  DQM54_RS07945 (NCTC3165_01583) - 1610168..1610437 (-) 270 WP_111724003.1 YlbG family protein -
  DQM54_RS07950 (NCTC3165_01584) clpP 1610515..1611132 (-) 618 WP_256262209.1 ATP-dependent Clp protease proteolytic subunit Regulator
  DQM54_RS07955 (NCTC3165_01585) upp 1611305..1611934 (-) 630 WP_002903228.1 uracil phosphoribosyltransferase -
  DQM54_RS07965 (NCTC3165_01586) mgtA 1612032..1614692 (-) 2661 WP_111724004.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22424.57 Da        Isoelectric Point: 4.4473

>NTDB_id=1139127 DQM54_RS07950 WP_256262209.1 1610515..1611132(-) (clpP) [Streptococcus gordonii strain NCTC3165]
MQLTESEKTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSA
GLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLE
QILADNSGKTVEQIHADAERDYWMSAEETLAYGFIDEIMANNNLS

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1139127 DQM54_RS07950 WP_256262209.1 1610515..1611132(-) (clpP) [Streptococcus gordonii strain NCTC3165]
ATCCAACTAACAGAAAGTGAGAAAACTATGATTCCTGTAGTTATTGAACAAACAAGTCGTGGGGAACGTTCTTATGATAT
TTACTCACGTCTATTAAAAGACCGCATCATCATGTTGACAGGTCCGGTAGAGGATAATATGGCTAATTCAGTCATTGCTC
AGCTTCTTTTCTTGGATGCACAAGACAGTACCAAGGATATCTACCTCTATGTTAATACACCAGGTGGTTCAGTCTCAGCT
GGTTTAGCGATTGTTGACACCATGAACTTTATTAAATCTGATGTCCAAACAATCGTTATGGGTATGGCAGCGAGCATGGG
AACCATCATCGCATCAAGCGGTGCCAAAGGCAAACGTTTCATGCTTCCAAATGCTGAATATATGATTCACCAGCCAATGG
GAGGAACTGGTGGTGGTACTCAGCAAACGGATATGGCTATTGCTGCGGAACACTTGCTGAAGACTCGGAAAACTTTAGAG
CAAATTCTTGCTGATAATTCTGGTAAAACAGTTGAGCAAATCCATGCTGATGCAGAACGTGATTATTGGATGAGTGCTGA
AGAAACTCTTGCTTATGGATTCATTGATGAGATCATGGCTAACAATAATTTGAGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(20-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

92.821

95.122

0.883
  clpP Streptococcus pyogenes JRS4

92.821

95.122

0.883
  clpP Streptococcus pneumoniae D39

92.347

95.61

0.883
  clpP Streptococcus pneumoniae TIGR4

92.347

95.61

0.883
  clpP Streptococcus pneumoniae R6

92.347

95.61

0.883
  clpP Streptococcus pneumoniae Rx1

92.347

95.61

0.883
  clpP Streptococcus mutans UA159

87.745

99.512

0.873
  clpP Streptococcus thermophilus LMD-9

91.282

95.122

0.868
  clpP Streptococcus thermophilus LMG 18311

91.282

95.122

0.868
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.179

95.122

0.829
  clpP Lactococcus lactis subsp. cremoris KW2

86.667

95.122

0.824
  clpP Bacillus subtilis subsp. subtilis str. 168

57.292

93.659

0.537
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.895

92.683

0.537

Multiple sequence alignment