Detailed information NTG1138914

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: DQM56_RS08145
• Genome accession: NZ_LS483368
• Coordinates: 1701553..1702143 (-)
• Length: 196 a.a.
• NCBI ID: WP_012677455.1
• Uniprot ID: A0A922T644
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC6176
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1696553..1707143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM56_RS08110 (NCTC6176_01643)	rsmI	1696897..1697763 (-)	867	WP_012516194.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	-
DQM56_RS08115 (NCTC6176_01644)	yabA	1697768..1698091 (-)	324	WP_012516195.1	DNA replication initiation control protein YabA	-
DQM56_RS08120 (NCTC6176_01645)	ricT	1698084..1698884 (-)	801	WP_021321086.1	regulatory iron-sulfur-containing complex subunit RicT	-
DQM56_RS08125 (NCTC6176_01646)	-	1698881..1699756 (-)	876	WP_111710772.1	DNA polymerase III subunit delta'	-
DQM56_RS08130 (NCTC6176_01647)	tmk	1699770..1700405 (-)	636	WP_111710773.1	dTMP kinase	-
DQM56_RS08135 (NCTC6176_01648)	-	1700719..1701003 (-)	285	WP_043053379.1	YlbG family protein	-
DQM56_RS08140 (NCTC6176_01649)	-	1701004..1701450 (-)	447	WP_043031349.1	YlbF family regulator	-
DQM56_RS08145 (NCTC6176_01650)	clpP	1701553..1702143 (-)	591	WP_012677455.1	ATP-dependent Clp protease proteolytic subunit	Regulator
DQM56_RS08150 (NCTC6176_01651)	upp	1702374..1703003 (-)	630	WP_012516202.1	uracil phosphoribosyltransferase	-
DQM56_RS08155 (NCTC6176_01652)	-	1703153..1704784 (-)	1632	WP_111710774.1	polysaccharide biosynthesis protein	-
DQM56_RS08160 (NCTC6176_01653)	-	1704870..1706315 (+)	1446	WP_111710775.1	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	-

Sequence

Protein

• Length: 196 a.a.
• Molecular weight: 21561.76 Da
• Isoelectric Point: 5.0281

>NTDB_id=1138914 DQM56_RS08145 WP_012677455.1 1701553..1702143(-) (clpP) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGK
TIKQIHKDAERDYWMSAEETLAYGFIDEIMENNELA

Nucleotide

• Length: 591 bp

>NTDB_id=1138914 DQM56_RS08145 WP_012677455.1 1701553..1702143(-) (clpP) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGATTCCTGTAGTTATTGAACAAACCAGTCGTGGAGAGCGTTCTTATGACATTTATTCACGTCTGTTAAAGGACCGTAT
TATCATGCTGACTGGTCCAGTAGAGGATAATATGGCAAACTCTGTTATTGCGCAGCTCTTGTTTTTAGATGCCCAAGACA
ACACAAAAGACATTTACCTCTATGTGAATACCCCAGGAGGCTCTGTATCAGCTGGTCTAGCTATTGTGGATACGATGAAC
TTTATTAAGGCAGATGTGCAAACCATTGTTATGGGTATGGCTGCCTCTATGGGAACCGTTATTGCTTCATCAGGTGCAAA
GGGCAAGCGCTTTATGCTTCCAAATGCAGAGTACATGATTCACCAGCCTATGGGAGGCACAGGTGGTGGTACACAGCAGA
CAGATATGGCCATTGCGGCTGAGCATTTATTAAAGACACGTCACCGCTTGGAAAAGATTTTGGCACAAAATGCCGGTAAA
ACGATCAAACAAATCCATAAGGACGCTGAGCGTGATTACTGGATGAGCGCAGAAGAGACCCTAGCCTATGGCTTTATTGA
TGAAATTATGGAAAATAATGAGCTAGCCTAG

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (11-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus pyogenes MGAS315	99.487	99.49	0.99
clpP	Streptococcus pyogenes JRS4	99.487	99.49	0.99
clpP	Streptococcus pneumoniae Rx1	91.282	99.49	0.908
clpP	Streptococcus pneumoniae D39	91.282	99.49	0.908
clpP	Streptococcus pneumoniae R6	91.282	99.49	0.908
clpP	Streptococcus mutans UA159	91.282	99.49	0.908
clpP	Streptococcus pneumoniae TIGR4	91.282	99.49	0.908
clpP	Streptococcus thermophilus LMG 18311	89.231	99.49	0.888
clpP	Streptococcus thermophilus LMD-9	89.231	99.49	0.888
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	85.641	99.49	0.852
clpP	Lactococcus lactis subsp. cremoris KW2	85.128	99.49	0.847
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.513	98.469	0.566
clpP	Bacillus subtilis subsp. subtilis str. 168	57.216	98.98	0.566