Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   DQM60_RS01470 Genome accession   NZ_LS483366
Coordinates   268342..269241 (+) Length   299 a.a.
NCBI ID   WP_045001949.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC7366     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 263342..274241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS01450 (NCTC7366_00288) trkA 264505..265854 (-) 1350 WP_014633874.1 Trk system potassium transporter TrkA -
  DQM60_RS01455 (NCTC7366_00290) - 266132..266641 (+) 510 WP_049529100.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  DQM60_RS01460 (NCTC7366_00292) - 266951..267508 (+) 558 WP_014633876.1 ECF transporter S component -
  DQM60_RS01465 (NCTC7366_00293) - 267511..268161 (+) 651 WP_014633877.1 phosphatase PAP2 family protein -
  DQM60_RS01470 (NCTC7366_00294) comR 268342..269241 (+) 900 WP_045001949.1 helix-turn-helix transcriptional regulator Regulator
  DQM60_RS01475 (NCTC7366_00295) comA 269416..271512 (+) 2097 WP_111686473.1 peptide cleavage/export ABC transporter Regulator
  DQM60_RS01480 (NCTC7366_00296) - 271623..271955 (+) 333 WP_014633880.1 DUF805 domain-containing protein -
  DQM60_RS01485 (NCTC7366_00297) - 272007..273398 (-) 1392 WP_014633611.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35181.70 Da        Isoelectric Point: 5.8538

>NTDB_id=1138757 DQM60_RS01470 WP_045001949.1 268342..269241(+) (comR) [Streptococcus salivarius strain NCTC7366]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMSDLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTNWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQFDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKKAAENYDKAIMFASVLEDSVLEESIRAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1138757 DQM60_RS01470 WP_045001949.1 268342..269241(+) (comR) [Streptococcus salivarius strain NCTC7366]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGTCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTAACTGTGCGTCAGTTAATTCGCATTGAAAAAGGGGAGTCACTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAACGTCTAGGAAAAAATATGTCTGATCTATTGGATCATGACAATATTACCATTCCTGACGAATATTATGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAAGT
CTATGAGAAATTCTTTGAACTTCTGCCAGAAGAAGAGTTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
ATTGGGAGGAGAGCCCAAAGGTTGAAGAAATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTCTATGGAAGAAAACAGTTTGACAAAAAACTTTTTGAAAGGAT
TGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGACGATGTCTATAATATTGTTTTATTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTTTCAGACTTCTTAACAGTTGTGGATAAAGCATTAGCCGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCTAAATATGAACTTCTGCATAAGGGAAATAAGAAAAAGGC
TGCAGAGAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTTTTAGAAGAAAGTATAAGAGCAGGGA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

97.659

100

0.977
  comR Streptococcus salivarius SK126

97.659

100

0.977
  comR Streptococcus thermophilus LMG 18311

93.645

100

0.936
  comR Streptococcus thermophilus LMD-9

92.977

100

0.93
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421

Multiple sequence alignment