Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   DQM47_RS04340 Genome accession   NZ_LS483360
Coordinates   847065..847739 (+) Length   224 a.a.
NCBI ID   WP_002984519.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10876     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 842065..852739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM47_RS04320 (NCTC10876_00860) pstB 842498..843256 (+) 759 WP_002993892.1 phosphate ABC transporter ATP-binding protein PstB -
  DQM47_RS04325 (NCTC10876_00861) phoU 843324..843977 (+) 654 WP_002984514.1 phosphate signaling complex protein PhoU -
  DQM47_RS04335 (NCTC10876_00862) - 844182..846719 (+) 2538 WP_085577298.1 M1 family metallopeptidase -
  DQM47_RS04340 (NCTC10876_00863) ciaR 847065..847739 (+) 675 WP_002984519.1 response regulator transcription factor Regulator
  DQM47_RS04345 (NCTC10876_00864) ciaH 847732..849042 (+) 1311 WP_011054528.1 sensor histidine kinase Regulator
  DQM47_RS04350 (NCTC10876_00865) rpsT 849167..849415 (-) 249 WP_009881183.1 30S ribosomal protein S20 -
  DQM47_RS04355 (NCTC10876_00866) coaA 849469..850389 (-) 921 WP_023610818.1 type I pantothenate kinase -
  DQM47_RS04360 (NCTC10876_00867) - 850657..851250 (+) 594 WP_010922352.1 class I SAM-dependent methyltransferase -
  DQM47_RS04365 (NCTC10876_00868) - 851903..852292 (+) 390 WP_023610810.1 cytidine deaminase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25703.91 Da        Isoelectric Point: 4.7287

>NTDB_id=1138469 DQM47_RS04340 WP_002984519.1 847065..847739(+) (ciaR) [Streptococcus pyogenes strain NCTC10876]
MIKILLVEDDLSLSNSIFDFLDDFADVMQVFDGDEGLYEAESGIYDLILLDLMLPEKNGFQVLKELREKDIKIPVLIMTA
KEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTGKFADKNISFGNLVVDLARKEVKVEGKVVELLGKEFDLLVY
LLQNQNVILPKTQIFDRLWGFDSDTTISVVEVYISKIRKKLKGTRFVNRLQTLRSVGYILKNNE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1138469 DQM47_RS04340 WP_002984519.1 847065..847739(+) (ciaR) [Streptococcus pyogenes strain NCTC10876]
ATGATAAAAATATTATTAGTAGAAGATGACTTGAGCTTATCAAATTCCATTTTTGATTTTTTAGATGATTTTGCAGACGT
CATGCAAGTTTTTGATGGCGATGAAGGTTTATACGAAGCAGAAAGTGGTATTTATGATTTGATTTTGTTAGACCTTATGT
TGCCGGAGAAAAATGGCTTTCAAGTCTTAAAAGAATTGCGAGAAAAAGATATTAAAATTCCTGTGTTGATCATGACAGCT
AAAGAGGGTTTAGATGATAAAGGTCACGGATTTGAATTAGGTGCTGATGATTATCTGACCAAGCCGTTCTATTTAGAAGA
GTTAAAAATGCGAATTCAAGCACTGTTAAAAAGAACAGGGAAATTTGCAGATAAAAATATTAGTTTTGGCAATTTAGTGG
TTGACTTAGCTCGAAAAGAGGTGAAGGTTGAAGGGAAAGTAGTTGAATTACTTGGCAAAGAATTTGATTTGTTGGTGTAT
CTTTTGCAAAATCAAAACGTTATTTTACCAAAGACACAAATTTTTGATCGTTTATGGGGATTCGATAGTGATACTACGAT
TTCGGTTGTTGAAGTTTACATTTCTAAAATAAGGAAAAAATTAAAAGGTACCCGTTTTGTTAACAGGCTTCAAACTTTAA
GAAGCGTAGGGTATATTCTAAAAAACAATGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

85.135

99.107

0.844
  ciaR Streptococcus pneumoniae D39

84.685

99.107

0.839
  ciaR Streptococcus pneumoniae R6

84.685

99.107

0.839
  ciaR Streptococcus pneumoniae TIGR4

84.685

99.107

0.839
  ciaR Streptococcus pneumoniae Rx1

84.685

99.107

0.839
  covR Lactococcus lactis subsp. lactis strain DGCC12653

39.111

100

0.393
  vicR Streptococcus mutans UA159

35.897

100

0.375
  micA Streptococcus pneumoniae Cp1015

35.47

100

0.371
  covR Streptococcus salivarius strain HSISS4

36.283

100

0.366

Multiple sequence alignment