Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL29_RS01505 Genome accession   NZ_LS483359
Coordinates   274094..274645 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12068     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 269094..279645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL29_RS01505 (NCTC12068_00299) comX/sigX/comX2/sigX2 274094..274645 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL29_RS01510 (NCTC12068_00300) - 275204..275731 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  DQL29_RS01515 (NCTC12068_00301) yqeH 275731..276849 (+) 1119 WP_030126156.1 ribosome biogenesis GTPase YqeH -
  DQL29_RS01520 (NCTC12068_00302) yhbY 276874..277182 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  DQL29_RS01525 (NCTC12068_00303) - 277251..277883 (+) 633 WP_030126155.1 nicotinate-nucleotide adenylyltransferase -
  DQL29_RS01530 (NCTC12068_00304) yqeK 277880..278473 (+) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DQL29_RS01535 (NCTC12068_00305) rsfS 278497..278850 (+) 354 WP_011017339.1 ribosome silencing factor -
  DQL29_RS01540 (NCTC12068_00306) - 278898..279641 (+) 744 WP_002991831.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1138402 DQL29_RS01505 WP_010921894.1 274094..274645(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12068]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1138402 DQL29_RS01505 WP_010921894.1 274094..274645(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12068]
GTGTCCTGTTGCTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAATCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.