Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQM46_RS08405 Genome accession   NZ_LS483357
Coordinates   1611027..1611578 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8326     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606027..1616578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM46_RS08370 (NCTC8326_01676) rsfS 1606608..1606961 (-) 354 WP_003049699.1 ribosome silencing factor -
  DQM46_RS08375 (NCTC8326_01677) - 1606963..1607223 (-) 261 WP_011528257.1 isochorismatase family protein -
  DQM46_RS08380 (NCTC8326_01678) yqeK 1607199..1607792 (-) 594 WP_003055753.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DQM46_RS08385 (NCTC8326_01679) - 1607789..1608421 (-) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -
  DQM46_RS08390 (NCTC8326_01680) yhbY 1608490..1608798 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  DQM46_RS08395 (NCTC8326_01681) yqeH 1608823..1609941 (-) 1119 WP_111678898.1 ribosome biogenesis GTPase YqeH -
  DQM46_RS08400 (NCTC8326_01682) - 1609941..1610468 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  DQM46_RS08405 (NCTC8326_01683) comX/sigX/comX2/sigX2 1611027..1611578 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1138349 DQM46_RS08405 WP_010921894.1 1611027..1611578(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC8326]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1138349 DQM46_RS08405 WP_010921894.1 1611027..1611578(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC8326]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.