Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQL13_RS08495 Genome accession   NZ_LS483354
Coordinates   1782512..1784488 (-) Length   658 a.a.
NCBI ID   WP_012516282.1    Uniprot ID   B4U4V9
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11606     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777512..1789488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL13_RS08475 (NCTC11606_01696) amiF 1778028..1778951 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  DQL13_RS08480 (NCTC11606_01697) amiE 1778944..1780014 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  DQL13_RS08485 (NCTC11606_01698) amiD 1780023..1780949 (-) 927 WP_012516280.1 oligopeptide ABC transporter permease OppC Regulator
  DQL13_RS08490 (NCTC11606_01699) amiC 1780949..1782448 (-) 1500 WP_012516281.1 ABC transporter permease Regulator
  DQL13_RS08495 (NCTC11606_01700) amiA3 1782512..1784488 (-) 1977 WP_012516282.1 peptide ABC transporter substrate-binding protein Regulator
  DQL13_RS08500 (NCTC11606_01701) pbp3 1784796..1786034 (+) 1239 WP_041785731.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL13_RS08505 (NCTC11606_01702) pbp3 1786358..1787593 (+) 1236 WP_012516284.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL13_RS08510 (NCTC11606_01703) - 1787677..1788858 (+) 1182 WP_012516285.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72745.16 Da        Isoelectric Point: 5.3425

>NTDB_id=1138183 DQL13_RS08495 WP_012516282.1 1782512..1784488(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MKKSKWLTTLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNEITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLNDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTYYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKSLRSTLVPPTFVQIGNKNFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQGETY
QNISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPTLANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKVVPFSGAFAWAGIKGDTYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEKYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1138183 DQL13_RS08495 WP_012516282.1 1782512..1784488(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATGAAGAAAAGTAAATGGTTGACAACGCTGGGTGTCGCAGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGAGATAACAACGAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGACGGCTTGACCTATACCTACACGCTTCGTGATGGGATTAAGTGGTACACATC
TGATGGAGAAGAGTATGCAGATGTGACAGCTGAGGATTTTGTAGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAACGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCGCTTGACAAAAAAACAGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCCTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATCC
TGTATAATGGTCCATTTCTTATCACAGCTTTGACAAGTAAATCCTCTATTGAGCTTGTCAAAAACGAAAATTATTGGGAT
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACTTATTATGATGGACAGGATCAGGAGTCATTGTTTAGAAACTTTGA
TGACGGTGCTTACTCTGCAGCGAGATTATTCCCAACAACACCTTCTTACAAAACCGTTAAGAAAAAATATGGAGATAGCA
TCACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCATTTAACCTAAACCGTACGTCTTACAACCATACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTTCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAATCGCTTCGTAGCACACTTGTGCCACCGACAT
TTGTGCAGATCGGCAACAAGAATTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTA
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAGAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGTGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGGGAGAGACCTAT
CAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGATTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGATTA
TGTCGACCCATCGTCATATCTTGATATTTTCAACCCAACGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGCAAGATTACTGAT
GATCTCAACGCCCGCTACACGCTTTATGCTAAGGCTCAAGCGGCATTGACAGACTCTGCCATTTACATCCCGACTATCTC
ACTTGGTGGAACACCACGTGTAACTAAAGTGGTACCGTTTTCAGGTGCCTTTGCTTGGGCTGGTATTAAGGGTGATACCT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAAAATATAATAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4U4V9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

55.909

100

0.561
  amiA3 Streptococcus thermophilus LMD-9

55.758

100

0.559
  amiA Streptococcus salivarius strain HSISS4

55.842

100

0.559

Multiple sequence alignment