Detailed information NTG1138179

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQL13_RS08475
• Genome accession: NZ_LS483354
• Coordinates: 1778028..1778951 (-)
• Length: 307 a.a.
• NCBI ID: WP_012516278.1
• Uniprot ID: A0AAW3GKE0
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC11606
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1773028..1783951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL13_RS08475 (NCTC11606_01696)	amiF	1778028..1778951 (-)	924	WP_012516278.1	ATP-binding cassette domain-containing protein	Regulator
DQL13_RS08480 (NCTC11606_01697)	amiE	1778944..1780014 (-)	1071	WP_012516279.1	ABC transporter ATP-binding protein	Regulator
DQL13_RS08485 (NCTC11606_01698)	amiD	1780023..1780949 (-)	927	WP_012516280.1	oligopeptide ABC transporter permease OppC	Regulator
DQL13_RS08490 (NCTC11606_01699)	amiC	1780949..1782448 (-)	1500	WP_012516281.1	ABC transporter permease	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34670.89 Da
• Isoelectric Point: 6.9308

>NTDB_id=1138179 DQL13_RS08475 WP_012516278.1 1778028..1778951(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQAEAERYRKEL

Nucleotide

• Length: 924 bp

>NTDB_id=1138179 DQL13_RS08475 WP_012516278.1 1778028..1778951(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATGTCTGAAAAATTAGTTGAAGTAAAAGACCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAATCAGGCAGCGGAAAGACAACAATAGGTCGTG
CTATCATTGGCTTAAATGAAACAAGCTCAGGCGAAATCCGCTACGATGGTAAGATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAAGACCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGCCTTTATAATTTTAACCTATTCAAAACAGAAGACGAACGTAAAGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTACCCTCATGAGTTTTCAGGTGGGCAGCGTCAGCGTATAGGC
ATTGCAAGAGCACTTGTAATGGATCCAGAGTTTGTCATTGCTGATGAGCCAATTTCAGCTCTTGATGTATCTGTTCGTGC
TCAGGTCTTGAACCTGTTGAAGAAAATACAGGCTGAAAAAGGCTTGACCTATTTATTCATCGCTCATGATTTATCGGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCATAAAGGAGTAATTGTTGAAGTTGCTGAAACAGAAGAGCTTTTTGTT
AATCCTGTTCACCCTTATACCAAATCTCTGTTGTCAGCAGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTCTATCATCCAGAGCAGCATGACTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGCAGAAGCGGAGCGTTACCGTAAAGAGCTTTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	83.007	99.674	0.827
amiF	Streptococcus thermophilus LMD-9	82.68	99.674	0.824
amiF	Streptococcus salivarius strain HSISS4	82.68	99.674	0.824