Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQL13_RS08485 Genome accession   NZ_LS483354
Coordinates   1780023..1780949 (-) Length   308 a.a.
NCBI ID   WP_012516280.1    Uniprot ID   B4U4V7
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11606     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775023..1785949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL13_RS08475 (NCTC11606_01696) amiF 1778028..1778951 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  DQL13_RS08480 (NCTC11606_01697) amiE 1778944..1780014 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  DQL13_RS08485 (NCTC11606_01698) amiD 1780023..1780949 (-) 927 WP_012516280.1 oligopeptide ABC transporter permease OppC Regulator
  DQL13_RS08490 (NCTC11606_01699) amiC 1780949..1782448 (-) 1500 WP_012516281.1 ABC transporter permease Regulator
  DQL13_RS08495 (NCTC11606_01700) amiA3 1782512..1784488 (-) 1977 WP_012516282.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34532.41 Da        Isoelectric Point: 7.1547

>NTDB_id=1138181 DQL13_RS08485 WP_012516280.1 1780023..1780949(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVVMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVIVGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1138181 DQL13_RS08485 WP_012516280.1 1780023..1780949(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCACGTAAATCAACCGTTGTGATGCTGGTTATTTTAATCGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTGACGTGAGCAATATTAATGATTTTTCAAAACGT
TATATAGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTTATTGCAACCATCATCAATATGATTATCGGAGTCATTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGGATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAACCTTTTGCCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGGTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACGAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4U4V7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.649

100

0.756
  amiD Streptococcus thermophilus LMG 18311

75.325

100

0.753
  amiD Streptococcus thermophilus LMD-9

75.325

100

0.753

Multiple sequence alignment