Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DQL13_RS00715 Genome accession   NZ_LS483354
Coordinates   123010..124044 (+) Length   344 a.a.
NCBI ID   WP_228275455.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11606     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 118010..129044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL13_RS00690 (NCTC11606_00139) - 118410..118775 (+) 366 WP_012514777.1 DUF1033 family protein -
  DQL13_RS00695 - 119052..119243 (+) 192 Protein_104 lactococcin 972 family bacteriocin -
  DQL13_RS00700 (NCTC11606_00140) - 119308..121311 (+) 2004 WP_111721612.1 DUF1430 domain-containing protein -
  DQL13_RS00705 (NCTC11606_00141) - 121313..121981 (+) 669 WP_012514779.1 ATP-binding cassette domain-containing protein -
  DQL13_RS00710 (NCTC11606_00142) comGA/cglA 122139..123077 (+) 939 WP_012514780.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL13_RS00715 (NCTC11606_00143) comYB 123010..124044 (+) 1035 WP_228275455.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL13_RS00720 (NCTC11606_00144) comGC/cglC 124045..124368 (+) 324 WP_012514782.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL13_RS00725 (NCTC11606_00145) comGD 124346..124771 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  DQL13_RS00730 (NCTC11606_00146) comGE 124776..125018 (+) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  DQL13_RS00735 (NCTC11606_00147) comYF 125005..125439 (+) 435 WP_037580631.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL13_RS00740 (NCTC11606_00148) comGG 125417..125779 (+) 363 WP_012514785.1 competence type IV pilus minor pilin ComGG -
  DQL13_RS00750 (NCTC11606_00151) comYH 127273..128226 (+) 954 WP_012514788.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39456.61 Da        Isoelectric Point: 9.3195

>NTDB_id=1138136 DQL13_RS00715 WP_228275455.1 123010..124044(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1138136 DQL13_RS00715 WP_228275455.1 123010..124044(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAATGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTCATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGATTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACGTATCCGATCATACTTTTAGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCGTTTTACCTATATGCCAGGTCCTG
TAGCAGGTTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAAATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.277

98.547

0.535
  comYB Streptococcus mutans UA159

54.277

98.547

0.535
  comYB Streptococcus gordonii str. Challis substr. CH1

52.647

98.837

0.52
  comGB/cglB Streptococcus mitis SK321

48.649

96.802

0.471
  comGB/cglB Streptococcus mitis NCTC 12261

48.204

97.093

0.468
  comGB/cglB Streptococcus pneumoniae Rx1

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae D39

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae R6

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae TIGR4

48.048

96.802

0.465
  comGB Lactococcus lactis subsp. cremoris KW2

45.723

98.547

0.451

Multiple sequence alignment