Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL39_RS00490 Genome accession   NZ_LS483353
Coordinates   81016..81567 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC4001     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 76016..86567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS00490 (NCTC4001_00100) comX/sigX/comX2/sigX2 81016..81567 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL39_RS00495 (NCTC4001_00101) truA 81754..82503 (+) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  DQL39_RS00500 (NCTC4001_00102) - 82493..83257 (+) 765 WP_002988136.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQL39_RS00505 (NCTC4001_00103) - 83247..83717 (+) 471 WP_002982824.1 ECF transporter S component -
  DQL39_RS00510 (NCTC4001_00104) - 83731..84291 (+) 561 WP_172450304.1 TIGR01440 family protein -
  DQL39_RS00515 (NCTC4001_00105) - 84356..85201 (-) 846 WP_038433585.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1138078 DQL39_RS00490 WP_010921894.1 81016..81567(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC4001]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1138078 DQL39_RS00490 WP_010921894.1 81016..81567(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC4001]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.