Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL37_RS08180 Genome accession   NZ_LS483352
Coordinates   1563683..1564234 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12052     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1558683..1569234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL37_RS08155 (NCTC12052_01617) - 1560049..1560894 (+) 846 WP_002982833.1 mechanosensitive ion channel family protein -
  DQL37_RS08160 (NCTC12052_01618) - 1560959..1561519 (-) 561 WP_002995157.1 TIGR01440 family protein -
  DQL37_RS08165 (NCTC12052_01619) - 1561533..1562003 (-) 471 WP_011106596.1 ECF transporter S component -
  DQL37_RS08170 (NCTC12052_01620) - 1561993..1562757 (-) 765 WP_111685814.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQL37_RS08175 (NCTC12052_01621) truA 1562747..1563496 (-) 750 WP_002995162.1 tRNA pseudouridine(38-40) synthase TruA -
  DQL37_RS08180 (NCTC12052_01622) comX/sigX/comX2/sigX2 1563683..1564234 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1138066 DQL37_RS08180 WP_010921894.1 1563683..1564234(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12052]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1138066 DQL37_RS08180 WP_010921894.1 1563683..1564234(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12052]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.