Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   DQM48_RS02630 Genome accession   NZ_LS483348
Coordinates   479111..479296 (+) Length   61 a.a.
NCBI ID   WP_043894982.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context


Location: 474111..484296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS02600 (NCTC8738_00531) - 474145..475380 (+) 1236 WP_020916368.1 cell division protein FtsQ/DivIB -
  DQM48_RS02605 (NCTC8738_00532) - 475402..476355 (-) 954 Protein_439 IS30 family transposase -
  DQM48_RS10295 - 476428..476640 (+) 213 WP_231872461.1 hypothetical protein -
  DQM48_RS10300 (NCTC8738_00533) - 476642..476899 (+) 258 WP_058813711.1 hypothetical protein -
  DQM48_RS10305 (NCTC8738_00534) - 476909..477259 (+) 351 WP_058833193.1 hypothetical protein -
  DQM48_RS02615 (NCTC8738_00535) - 477552..477755 (+) 204 WP_020916371.1 cold-shock protein -
  DQM48_RS02625 (NCTC8738_00536) - 478439..478807 (+) 369 WP_111698307.1 sigma-70 family RNA polymerase sigma factor -
  DQM48_RS02630 (NCTC8738_00537) prx 479111..479296 (+) 186 WP_043894982.1 Paratox Regulator
  DQM48_RS02635 (NCTC8738_00538) ftsA 479651..481024 (+) 1374 WP_020916374.1 cell division protein FtsA -
  DQM48_RS02640 (NCTC8738_00539) ftsZ 481044..482369 (+) 1326 WP_111698309.1 cell division protein FtsZ -
  DQM48_RS02645 (NCTC8738_00540) - 482369..483043 (+) 675 WP_058813713.1 YggS family pyridoxal phosphate-dependent enzyme -
  DQM48_RS02650 (NCTC8738_00541) - 483056..483667 (+) 612 WP_111698311.1 cell division protein SepF -
  DQM48_RS02655 (NCTC8738_00542) - 483671..483928 (+) 258 WP_006531549.1 YggT family protein -

Sequence


Protein


Download         Length: 61 a.a.        Molecular weight: 7161.24 Da        Isoelectric Point: 4.3466

>NTDB_id=1137817 DQM48_RS02630 WP_043894982.1 479111..479296(+) (prx) [Streptococcus lutetiensis strain NCTC8738]
MLYYDELKKAIDRGFITGDTIQIVRKNGIVFDYVLPNEPVKPYEVVTTERVADVLEELKEW

Nucleotide


Download         Length: 186 bp        

>NTDB_id=1137817 DQM48_RS02630 WP_043894982.1 479111..479296(+) (prx) [Streptococcus lutetiensis strain NCTC8738]
ATGTTATATTATGATGAACTAAAAAAGGCAATCGATAGAGGCTTTATAACAGGTGATACTATTCAAATTGTGAGAAAGAA
TGGGATAGTATTTGATTATGTTTTACCTAATGAGCCAGTAAAGCCCTATGAGGTAGTTACTACTGAACGAGTAGCAGACG
TTTTGGAAGAGCTAAAAGAATGGTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

66.102

96.721

0.639

  prx Streptococcus pyogenes MGAS315

67.241

95.082

0.639

  prx Streptococcus pyogenes MGAS8232

65.517

95.082

0.623

  prx Streptococcus pyogenes MGAS315

63.793

95.082

0.607

  prx Streptococcus pyogenes MGAS315

69.048

68.852

0.475

  prx Streptococcus pyogenes MGAS315

68.293

67.213

0.459

  prx Streptococcus pyogenes MGAS315

65.854

67.213

0.443


Multiple sequence alignment