Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   DQM73_RS12265 Genome accession   NZ_LS483346
Coordinates   2447317..2448489 (+) Length   390 a.a.
NCBI ID   WP_002927420.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11085     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2442317..2453489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS12225 - 2442459..2443810 (+) 1352 WP_111681466.1 IS3 family transposase -
  DQM73_RS12240 (NCTC11085_02410) comE 2444097..2444861 (-) 765 WP_002899424.1 competence system response regulator transcription factor ComE Regulator
  DQM73_RS12245 (NCTC11085_02411) comD 2444867..2446201 (-) 1335 WP_002927417.1 competence system sensor histidine kinase ComD -
  DQM73_RS12250 (NCTC11085_02412) - 2446229..2446336 (-) 108 WP_002894290.1 hypothetical protein -
  DQM73_RS12260 (NCTC11085_02414) rlmH 2446634..2447113 (-) 480 WP_002927418.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQM73_RS12265 (NCTC11085_02415) htrA 2447317..2448489 (+) 1173 WP_002927420.1 S1C family serine protease Regulator
  DQM73_RS12270 (NCTC11085_02416) spo0J 2448553..2449314 (+) 762 WP_002927422.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 390 a.a.        Molecular weight: 40884.68 Da        Isoelectric Point: 4.8344

>NTDB_id=1137733 DQM73_RS12265 WP_002927420.1 2447317..2448489(+) (htrA) [Streptococcus sanguinis strain NCTC11085]
MKNSSNAIKKALLLFAVLIVGFIGGSLGNYVTTLVTSRVKMNGNSTTSVTTSYKNSTDISEAVKKVQNAVVSVITYAESS
SSVINDESSNDESQISSEGSGVIYKKDGKSAYLVTNTHVLNGSTNVDILLADGNKVPGEVVGSDVYSDISVVKISSEKVT
DVAEFGDSKSLTVGETAIAIGSPLGTEYANSVTQGIISSLGRNVTLQSENGENISTTALQTDAAINPGNSGGPLINIQGQ
VIGITSSKISTNGQTSVEGMGFAIPSNDVVNIINQLEKNGTVTRPALGIQMMDLSNLTTSDFSKLNLPSSVKSGVLVRSV
QQGMPADGKLQKNDVITKVDNTDVESTSDLQSALYKHSIGDEVEITYYRDGKSQTVKIKLTKSTKELSSN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=1137733 DQM73_RS12265 WP_002927420.1 2447317..2448489(+) (htrA) [Streptococcus sanguinis strain NCTC11085]
ATGAAAAACTCTTCAAATGCCATCAAAAAGGCTTTATTGCTTTTTGCAGTGTTAATTGTAGGTTTTATCGGCGGAAGTTT
AGGGAATTATGTTACTACATTAGTAACTTCACGTGTAAAAATGAATGGAAATTCAACAACCAGTGTAACTACTTCATATA
AAAACTCTACAGACATTTCAGAAGCTGTGAAAAAGGTTCAAAATGCGGTTGTTTCAGTAATTACTTATGCTGAATCTTCT
AGCAGCGTTATCAATGATGAATCTTCCAACGATGAATCACAAATCTCCAGTGAAGGTTCTGGCGTAATTTATAAAAAAGA
CGGAAAATCAGCCTATCTAGTAACCAACACCCACGTTCTTAACGGATCAACCAATGTAGATATCTTGCTAGCTGATGGAA
ACAAGGTTCCAGGTGAAGTAGTTGGATCAGATGTTTATTCAGATATCTCTGTCGTTAAAATTAGCTCTGAAAAAGTGACT
GATGTCGCTGAATTTGGAGATTCTAAATCTCTGACAGTTGGTGAGACAGCTATCGCTATCGGAAGTCCTCTTGGAACAGA
ATATGCTAACTCTGTCACACAAGGAATTATTTCTAGTTTAGGCAGAAACGTTACGTTACAATCTGAAAATGGTGAAAATA
TTTCAACAACTGCACTGCAAACAGATGCTGCAATCAATCCTGGTAACTCTGGCGGTCCGTTGATTAACATACAAGGACAA
GTTATTGGGATTACTTCAAGTAAAATCTCAACAAATGGCCAAACCTCTGTTGAAGGGATGGGATTTGCGATTCCATCTAA
TGATGTCGTAAATATTATCAATCAACTTGAGAAAAATGGAACAGTCACACGTCCTGCTTTAGGAATTCAAATGATGGATT
TATCTAATCTGACAACTTCTGATTTTTCTAAATTAAATCTTCCTTCTTCAGTGAAATCAGGTGTTCTTGTTCGTTCTGTT
CAGCAAGGAATGCCTGCTGATGGCAAGCTTCAAAAAAATGATGTCATTACAAAAGTAGATAACACAGATGTGGAATCCAC
TAGTGATTTACAATCTGCTCTCTACAAGCATAGTATTGGAGATGAAGTAGAAATTACTTATTATCGAGATGGTAAATCTC
AAACAGTCAAAATCAAACTCACTAAATCAACAAAAGAGTTAAGCTCAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

67.929

100

0.69

  htrA Streptococcus mitis NCTC 12261

64.377

100

0.649

  htrA Streptococcus pneumoniae Rx1

64.377

100

0.649

  htrA Streptococcus pneumoniae D39

64.377

100

0.649

  htrA Streptococcus pneumoniae R6

64.377

100

0.649

  htrA Streptococcus pneumoniae TIGR4

64.377

100

0.649

  htrA Streptococcus mutans UA159

54.684

100

0.554


Multiple sequence alignment