Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DQL23_RS04505 Genome accession   NZ_LS483341
Coordinates   947180..947797 (+) Length   205 a.a.
NCBI ID   WP_256262209.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 942180..952797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04490 (NCTC7865_00902) mgtA 943620..946280 (+) 2661 WP_060554124.1 magnesium-translocating P-type ATPase -
  DQL23_RS04500 (NCTC7865_00903) upp 946378..947007 (+) 630 WP_002903228.1 uracil phosphoribosyltransferase -
  DQL23_RS04505 (NCTC7865_00904) clpP 947180..947797 (+) 618 WP_256262209.1 ATP-dependent Clp protease proteolytic subunit Regulator
  DQL23_RS04510 (NCTC7865_00905) - 947875..948144 (+) 270 WP_045504002.1 YlbG family protein -
  DQL23_RS04515 (NCTC7865_00906) - 948234..949400 (+) 1167 WP_060554125.1 ABC transporter substrate-binding protein -
  DQL23_RS04520 (NCTC7865_00907) - 949559..950428 (+) 870 WP_008809556.1 branched-chain amino acid ABC transporter permease -
  DQL23_RS04525 (NCTC7865_00908) - 950432..951385 (+) 954 WP_060554126.1 branched-chain amino acid ABC transporter permease -
  DQL23_RS04530 (NCTC7865_00909) - 951385..952149 (+) 765 WP_008809554.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22424.57 Da        Isoelectric Point: 4.4473

>NTDB_id=1137487 DQL23_RS04505 WP_256262209.1 947180..947797(+) (clpP) [Streptococcus gordonii strain NCTC7865]
MQLTESEKTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSA
GLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLE
QILADNSGKTVEQIHADAERDYWMSAEETLAYGFIDEIMANNNLS

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1137487 DQL23_RS04505 WP_256262209.1 947180..947797(+) (clpP) [Streptococcus gordonii strain NCTC7865]
ATCCAACTAACAGAAAGTGAGAAAACTATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGTTCTTATGATAT
TTACTCACGTCTATTAAAAGATCGTATTATTATGTTGACTGGACCGGTCGAGGACAACATGGCTAATTCAGTCATTGCTC
AGCTTCTTTTCTTGGATGCACAAGATAGCACCAAGGATATCTACCTTTATGTTAATACACCAGGTGGTTCAGTCTCAGCA
GGATTGGCTATTGTTGACACCATGAACTTTATTAAATCTGATGTCCAAACAATCGTTATGGGTATGGCGGCGAGCATGGG
AACCATCATCGCATCAAGCGGTGCCAAAGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAGCCAATGG
GAGGTACTGGTGGTGGTACTCAGCAAACGGATATGGCTATTGCTGCAGAACATTTGCTGAAGACTCGGAAAACTTTAGAG
CAAATTCTTGCTGATAATTCTGGTAAAACAGTTGAGCAAATCCATGCTGATGCAGAACGTGATTATTGGATGAGTGCTGA
AGAAACTCTTGCTTATGGATTCATTGATGAGATCATGGCTAACAATAATTTGAGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(20-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

92.821

95.122

0.883
  clpP Streptococcus pyogenes JRS4

92.821

95.122

0.883
  clpP Streptococcus pneumoniae D39

92.347

95.61

0.883
  clpP Streptococcus pneumoniae TIGR4

92.347

95.61

0.883
  clpP Streptococcus pneumoniae R6

92.347

95.61

0.883
  clpP Streptococcus pneumoniae Rx1

92.347

95.61

0.883
  clpP Streptococcus mutans UA159

87.745

99.512

0.873
  clpP Streptococcus thermophilus LMD-9

91.282

95.122

0.868
  clpP Streptococcus thermophilus LMG 18311

91.282

95.122

0.868
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.179

95.122

0.829
  clpP Lactococcus lactis subsp. cremoris KW2

86.667

95.122

0.824
  clpP Bacillus subtilis subsp. subtilis str. 168

57.292

93.659

0.537
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.895

92.683

0.537

Multiple sequence alignment