Detailed information NTG1137389

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DQL34_RS10325
• Genome accession: NZ_LS483339
• Coordinates: 1947162..1947590 (-)
• Length: 142 a.a.
• NCBI ID: WP_171815055.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain NCTC12958
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1942162..1952590

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL34_RS10285 (NCTC12958_02174)	-	1942300..1942743 (-)	444	WP_011681680.1	hypothetical protein	-
DQL34_RS12285 (NCTC12958_02175)	-	1942817..1943242 (-)	426	WP_111679733.1	CPBP family intramembrane glutamic endopeptidase	-
DQL34_RS10295 (NCTC12958_02176)	-	1943485..1943682 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
DQL34_RS10300 (NCTC12958_02177)	-	1943931..1945124 (-)	1194	WP_084826168.1	acetate kinase	-
DQL34_RS10305 (NCTC12958_02178)	comYH	1945180..1946136 (-)	957	WP_023909974.1	class I SAM-dependent methyltransferase	Machinery gene
DQL34_RS10310 (NCTC12958_02179)	comGG	1946181..1946498 (-)	318	WP_023909975.1	competence type IV pilus minor pilin ComGG	-
DQL34_RS10315 (NCTC12958_02180)	comYF	1946476..1946913 (-)	438	WP_084825661.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQL34_RS10320 (NCTC12958_02181)	comGE	1946897..1947190 (-)	294	WP_100262274.1	competence type IV pilus minor pilin ComGE	-
DQL34_RS10325 (NCTC12958_02182)	comYD	1947162..1947590 (-)	429	WP_171815055.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQL34_RS10330 (NCTC12958_02183)	comYC	1947550..1947876 (-)	327	WP_023909980.1	competence type IV pilus major pilin ComGC	Machinery gene
DQL34_RS10335 (NCTC12958_02184)	comYB	1947873..1948973 (-)	1101	WP_133264040.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQL34_RS10340 (NCTC12958_02185)	comYA	1948855..1949796 (-)	942	WP_014622005.1	competence type IV pilus ATPase ComGA	Machinery gene
DQL34_RS10345 (NCTC12958_02186)	-	1949877..1950239 (-)	363	WP_111679734.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15874.46 Da
• Isoelectric Point: 10.4608

>NTDB_id=1137389 DQL34_RS10325 WP_171815055.1 1947162..1947590(-) (comYD) [Streptococcus thermophilus strain NCTC12958]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASSEGSNVELQLTKN
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=1137389 DQL34_RS10325 WP_171815055.1 1947162..1947590(-) (comYD) [Streptococcus thermophilus strain NCTC12958]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACGCTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCATCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGAAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	42.143	98.592	0.415
comGD/cglD	Streptococcus pneumoniae Rx1	43.307	89.437	0.387
comGD/cglD	Streptococcus pneumoniae D39	43.307	89.437	0.387
comGD/cglD	Streptococcus pneumoniae R6	43.307	89.437	0.387
comGD/cglD	Streptococcus mitis NCTC 12261	43.307	89.437	0.387
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	89.437	0.387
comGD/cglD	Streptococcus mitis SK321	42.52	89.437	0.38
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38