Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQL34_RS02035 Genome accession   NZ_LS483339
Coordinates   376441..376629 (-) Length   62 a.a.
NCBI ID   WP_100262545.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 371441..381629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS11275 - 372383..373051 (+) 669 Protein_348 HI_0552 family protein -
  DQL34_RS02005 (NCTC12958_00426) - 373054..373644 (+) 591 WP_084828489.1 cysteine hydrolase family protein -
  DQL34_RS02010 (NCTC12958_00427) - 373605..374180 (-) 576 Protein_350 IS256-like element IS1191 family transposase -
  DQL34_RS02015 (NCTC12958_00428) - 374367..374825 (+) 459 WP_100262543.1 ArdC family protein -
  DQL34_RS12435 - 375551..375778 (+) 228 WP_332835552.1 hypothetical protein -
  DQL34_RS02030 (NCTC12958_00429) - 375772..376410 (+) 639 WP_100262544.1 hypothetical protein -
  DQL34_RS02035 (NCTC12958_00430) prx 376441..376629 (-) 189 WP_100262545.1 hypothetical protein Regulator
  DQL34_RS02040 (NCTC12958_00431) serS 377110..378387 (-) 1278 WP_014607978.1 serine--tRNA ligase -
  DQL34_RS02045 (NCTC12958_00433) - 378596..378970 (-) 375 WP_014607979.1 DUF956 family protein -
  DQL34_RS02050 (NCTC12958_00434) - 379049..379960 (-) 912 WP_014607980.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  DQL34_RS02055 (NCTC12958_00435) - 379975..380802 (-) 828 WP_084828490.1 PTS mannose/fructose/sorbose transporter subunit IIC -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7035.01 Da        Isoelectric Point: 4.4205

>NTDB_id=1137348 DQL34_RS02035 WP_100262545.1 376441..376629(-) (prx) [Streptococcus thermophilus strain NCTC12958]
MLTYDEFKEAMDKGFIKGDTVQIVLKNGKIHDYVLDGERVEPHEILSLEKVSDIIKELGGDN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=1137348 DQL34_RS02035 WP_100262545.1 376441..376629(-) (prx) [Streptococcus thermophilus strain NCTC12958]
ATGCTAACCTATGATGAATTTAAAGAGGCTATGGACAAGGGTTTTATTAAAGGTGATACTGTCCAGATTGTCCTAAAGAA
TGGTAAGATCCATGACTACGTTTTAGACGGTGAACGAGTTGAGCCACACGAAATATTGAGCTTAGAAAAGGTATCGGATA
TAATAAAAGAACTAGGCGGAGACAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

56.897

93.548

0.532
  prx Streptococcus pyogenes MGAS8232

55.932

95.161

0.532
  prx Streptococcus pyogenes MGAS315

55.932

95.161

0.532
  prx Streptococcus pyogenes MGAS315

55.172

93.548

0.516
  prx Streptococcus pyogenes MGAS315

69.767

69.355

0.484
  prx Streptococcus pyogenes MGAS315

70.732

66.129

0.468
  prx Streptococcus pyogenes MGAS315

65.909

70.968

0.468

Multiple sequence alignment