Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQM35_RS01430 Genome accession   NZ_LS483338
Coordinates   260208..260759 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12064     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 255208..265759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM35_RS01430 (NCTC12064_00280) comX/sigX/comX2/sigX2 260208..260759 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQM35_RS01435 (NCTC12064_00281) truA 260946..261695 (+) 750 WP_002995162.1 tRNA pseudouridine(38-40) synthase TruA -
  DQM35_RS01440 (NCTC12064_00282) - 261685..262449 (+) 765 WP_020837773.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQM35_RS01445 (NCTC12064_00283) - 262439..262909 (+) 471 WP_011106596.1 ECF transporter S component -
  DQM35_RS01450 (NCTC12064_00284) - 262923..263483 (+) 561 WP_002995157.1 TIGR01440 family protein -
  DQM35_RS01455 (NCTC12064_00285) - 263548..264393 (-) 846 WP_038431573.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1137295 DQM35_RS01430 WP_010921894.1 260208..260759(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12064]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1137295 DQM35_RS01430 WP_010921894.1 260208..260759(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12064]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.