Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL03_RS07925 Genome accession   NZ_LS483337
Coordinates   1541223..1541765 (-) Length   180 a.a.
NCBI ID   WP_076612468.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12047     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536223..1546765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL03_RS07900 (NCTC12047_01573) - 1537580..1538425 (+) 846 WP_063629236.1 mechanosensitive ion channel family protein -
  DQL03_RS07905 (NCTC12047_01574) - 1538490..1539050 (-) 561 WP_172449944.1 TIGR01440 family protein -
  DQL03_RS07910 (NCTC12047_01575) - 1539064..1539534 (-) 471 WP_011106596.1 ECF transporter S component -
  DQL03_RS07915 (NCTC12047_01576) - 1539524..1540288 (-) 765 WP_002982821.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQL03_RS07920 (NCTC12047_01577) truA 1540278..1541027 (-) 750 WP_063629239.1 tRNA pseudouridine(38-40) synthase TruA -
  DQL03_RS07925 (NCTC12047_01578) comX/sigX/comX2/sigX2 1541223..1541765 (-) 543 WP_076612468.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21911.66 Da        Isoelectric Point: 10.0375

>NTDB_id=1137270 DQL03_RS07925 WP_076612468.1 1541223..1541765(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12047]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFA

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1137270 DQL03_RS07925 WP_076612468.1 1541223..1541765(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12047]
GTGTCCTGTTGCTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTTCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.