Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL28_RS01465 Genome accession   NZ_LS483334
Coordinates   265535..266077 (+) Length   180 a.a.
NCBI ID   WP_076612468.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12050     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 260535..271077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL28_RS01465 (NCTC12050_00285) comX/sigX/comX2/sigX2 265535..266077 (+) 543 WP_076612468.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL28_RS01470 (NCTC12050_00286) truA 266273..267022 (+) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  DQL28_RS01475 (NCTC12050_00287) - 267012..267776 (+) 765 WP_111676130.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQL28_RS01480 (NCTC12050_00288) - 267766..268236 (+) 471 WP_002982824.1 ECF transporter S component -
  DQL28_RS01485 (NCTC12050_00289) - 268250..268810 (+) 561 WP_014407836.1 TIGR01440 family protein -
  DQL28_RS01490 (NCTC12050_00290) - 268875..269720 (-) 846 WP_111676132.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21911.66 Da        Isoelectric Point: 10.0375

>NTDB_id=1137070 DQL28_RS01465 WP_076612468.1 265535..266077(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12050]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFA

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1137070 DQL28_RS01465 WP_076612468.1 265535..266077(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12050]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTTCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.