Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL30_RS01600 Genome accession   NZ_LS483333
Coordinates   283424..283975 (+) Length   183 a.a.
NCBI ID   WP_080011078.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12048     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 278424..288975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL30_RS01600 (NCTC12048_00319) comX/sigX/comX2/sigX2 283424..283975 (+) 552 WP_080011078.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL30_RS01605 (NCTC12048_00320) truA 284162..284911 (+) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  DQL30_RS01610 (NCTC12048_00321) - 284901..285665 (+) 765 WP_009880948.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQL30_RS01615 (NCTC12048_00322) - 285655..286125 (+) 471 WP_002988139.1 ECF transporter S component -
  DQL30_RS01620 (NCTC12048_00323) - 286139..286699 (+) 561 WP_172449885.1 TIGR01440 family protein -
  DQL30_RS01625 (NCTC12048_00324) - 286764..287609 (-) 846 WP_002982833.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22228.03 Da        Isoelectric Point: 9.8369

>NTDB_id=1137016 DQL30_RS01600 WP_080011078.1 283424..283975(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12048]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
CFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1137016 DQL30_RS01600 WP_080011078.1 283424..283975(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12048]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
TGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

99.454

100

0.995
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

99.454

100

0.995
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

98.907

100

0.989
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

98.907

100

0.989
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

98.907

100

0.989
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

98.907

100

0.989
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.667

81.967

0.399
  comX Streptococcus sobrinus strain NIDR 6715-7

46.104

84.153

0.388
  comX/sigX Streptococcus mutans UA159

44.444

83.607

0.372

Multiple sequence alignment