Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQM36_RS01435 Genome accession   NZ_LS483332
Coordinates   262638..263189 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12696     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 257638..268189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM36_RS01435 (NCTC12696_00282) comX/sigX/comX2/sigX2 262638..263189 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQM36_RS01440 (NCTC12696_00283) - 263748..264275 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  DQM36_RS01445 (NCTC12696_00284) yqeH 264275..265393 (+) 1119 WP_038432795.1 ribosome biogenesis GTPase YqeH -
  DQM36_RS01450 (NCTC12696_00285) yhbY 265418..265726 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  DQM36_RS01455 (NCTC12696_00286) - 265795..266427 (+) 633 WP_014407306.1 nicotinate-nucleotide adenylyltransferase -
  DQM36_RS01460 (NCTC12696_00287) yqeK 266424..267017 (+) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DQM36_RS01465 (NCTC12696_00288) rsfS 267041..267394 (+) 354 WP_038432978.1 ribosome silencing factor -
  DQM36_RS01470 (NCTC12696_00289) - 267442..268185 (+) 744 WP_038432800.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1136957 DQM36_RS01435 WP_010921894.1 262638..263189(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12696]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1136957 DQM36_RS01435 WP_010921894.1 262638..263189(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12696]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.