Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   DQL25_RS03245 Genome accession   NZ_LS483330
Coordinates   598223..598405 (+) Length   60 a.a.
NCBI ID   WP_111703187.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8328     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context


Location: 593223..603405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL25_RS09825 (NCTC8328_00636) - 593280..593402 (+) 123 WP_015055953.1 hypothetical protein -
  DQL25_RS03205 (NCTC8328_00637) - 593416..593739 (+) 324 WP_015055952.1 hypothetical protein -
  DQL25_RS03210 (NCTC8328_00638) - 593739..594071 (+) 333 WP_011054798.1 phage holin -
  DQL25_RS03215 (NCTC8328_00639) - 594073..594837 (+) 765 WP_011054797.1 CHAP domain-containing protein -
  DQL25_RS03220 (NCTC8328_00640) - 594849..595451 (+) 603 WP_011054796.1 hypothetical protein -
  DQL25_RS03225 (NCTC8328_00641) - 595462..596235 (+) 774 WP_011054795.1 hypothetical protein -
  DQL25_RS03230 (NCTC8328_00642) - 596245..596466 (+) 222 WP_009880241.1 hypothetical protein -
  DQL25_RS03235 (NCTC8328_00643) - 596466..597125 (+) 660 WP_009880240.1 hypothetical protein -
  DQL25_RS03240 (NCTC8328_00644) speA 597247..598002 (-) 756 WP_009880239.1 streptococcal pyrogenic exotoxin SpeA -
  DQL25_RS03245 (NCTC8328_00645) prx 598223..598405 (+) 183 WP_111703187.1 Paratox Regulator
  DQL25_RS03250 (NCTC8328_00646) rlmD 598662..599951 (+) 1290 WP_231871320.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  DQL25_RS03255 (NCTC8328_00647) rocA 600616..601971 (+) 1356 WP_011285039.1 transcriptional regulator RocA -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6951.96 Da        Isoelectric Point: 4.2336

>NTDB_id=1136854 DQL25_RS03245 WP_111703187.1 598223..598405(+) (prx) [Streptococcus pyogenes strain NCTC8328]
MLYIDEFKEAIDKGDILGDTVAIVRKNGKIFDYVLPHEKVRDDEVVTVERVEDVMVELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1136854 DQL25_RS03245 WP_111703187.1 598223..598405(+) (prx) [Streptococcus pyogenes strain NCTC8328]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGATAAGGGGGATATTTTAGGTGACACAGTAGCGATAGTGCGTAAAAA
CGGAAAGATATTTGATTATGTGTTACCACACGAAAAAGTGAGAGATGATGAAGTTGTGACGGTAGAGAGAGTGGAAGACG
TGATGGTGGAATTAGACAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

96.667

100

0.967

  prx Streptococcus pyogenes MGAS315

75

100

0.75

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

71.667

100

0.717

  prx Streptococcus pyogenes MGAS8232

71.667

100

0.717

  prx Streptococcus pyogenes MGAS315

65

100

0.65

  prx Streptococcus pyogenes MGAS315

73.81

70

0.517


Multiple sequence alignment