Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL27_RS01605 Genome accession   NZ_LS483329
Coordinates   287369..287920 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12058     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 282369..292920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL27_RS01605 (NCTC12058_00319) comX/sigX/comX2/sigX2 287369..287920 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL27_RS01610 (NCTC12058_00320) - 288479..289006 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  DQL27_RS01615 (NCTC12058_00321) yqeH 289006..290124 (+) 1119 WP_031488554.1 ribosome biogenesis GTPase YqeH -
  DQL27_RS01620 (NCTC12058_00322) yhbY 290149..290457 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  DQL27_RS01625 (NCTC12058_00323) - 290526..291158 (+) 633 WP_031488555.1 nicotinate-nucleotide adenylyltransferase -
  DQL27_RS01630 (NCTC12058_00324) yqeK 291155..291748 (+) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DQL27_RS01635 (NCTC12058_00325) rsfS 291772..292125 (+) 354 WP_011017339.1 ribosome silencing factor -
  DQL27_RS01640 (NCTC12058_00326) - 292173..292916 (+) 744 WP_014407307.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1136792 DQL27_RS01605 WP_010921894.1 287369..287920(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12058]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1136792 DQL27_RS01605 WP_010921894.1 287369..287920(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12058]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.