Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQL47_RS04790 Genome accession   NZ_LS483328
Coordinates   997630..997818 (+) Length   62 a.a.
NCBI ID   WP_043983595.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 963912..999862 997630..997818 within 0


Gene organization within MGE regions


Location: 963912..999862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS04540 (NCTC12090_00906) - 963912..965000 (-) 1089 WP_050316838.1 site-specific integrase -
  DQL47_RS04545 (NCTC12090_00907) - 965126..966199 (-) 1074 WP_111678835.1 Abi family protein -
  DQL47_RS04550 (NCTC12090_00908) - 966401..967189 (-) 789 WP_111678015.1 XRE family transcriptional regulator -
  DQL47_RS04555 (NCTC12090_00910) - 967464..968147 (-) 684 WP_043052997.1 DUF4145 domain-containing protein -
  DQL47_RS04560 (NCTC12090_00911) - 968204..968395 (+) 192 WP_043983624.1 helix-turn-helix transcriptional regulator -
  DQL47_RS04565 (NCTC12090_00912) - 968463..969188 (+) 726 WP_043983623.1 phage antirepressor KilAC domain-containing protein -
  DQL47_RS10490 (NCTC12090_00913) - 969201..969332 (+) 132 WP_002985401.1 hypothetical protein -
  DQL47_RS04570 (NCTC12090_00914) - 969329..969511 (-) 183 WP_011889039.1 hypothetical protein -
  DQL47_RS04575 (NCTC12090_00915) - 969618..969908 (+) 291 WP_043983622.1 MerR family transcriptional regulator -
  DQL47_RS04580 (NCTC12090_00916) - 970054..970866 (+) 813 WP_050316935.1 phage replisome organizer N-terminal domain-containing protein -
  DQL47_RS04585 (NCTC12090_00917) - 970853..971635 (+) 783 WP_043983621.1 ATP-binding protein -
  DQL47_RS04590 (NCTC12090_00919) - 971772..971984 (+) 213 WP_043983620.1 hypothetical protein -
  DQL47_RS04595 (NCTC12090_00920) - 972048..972437 (+) 390 WP_111678017.1 YopX family protein -
  DQL47_RS04600 (NCTC12090_00921) - 972434..972778 (+) 345 WP_043983618.1 VVA0879 family protein -
  DQL47_RS04605 (NCTC12090_00922) - 972775..972975 (+) 201 WP_043983617.1 hypothetical protein -
  DQL47_RS04610 (NCTC12090_00923) - 972968..973195 (+) 228 WP_043983616.1 membrane protein -
  DQL47_RS04615 (NCTC12090_00924) - 973199..973684 (+) 486 WP_043983615.1 class I SAM-dependent methyltransferase -
  DQL47_RS04620 (NCTC12090_00925) - 973681..974439 (+) 759 WP_043983614.1 DNA methyltransferase -
  DQL47_RS04625 (NCTC12090_00926) - 974436..974654 (+) 219 WP_043983613.1 hypothetical protein -
  DQL47_RS04630 (NCTC12090_00927) - 974654..975085 (+) 432 WP_043983612.1 ArpU family phage packaging/lysis transcriptional regulator -
  DQL47_RS04635 (NCTC12090_00928) - 975223..975789 (+) 567 WP_111678019.1 tyrosine-type recombinase/integrase -
  DQL47_RS04640 (NCTC12090_00929) - 975953..976291 (+) 339 WP_043983611.1 HNH endonuclease -
  DQL47_RS04645 (NCTC12090_00930) - 976428..977690 (+) 1263 WP_043983610.1 hypothetical protein -
  DQL47_RS04650 (NCTC12090_00931) - 977683..979080 (+) 1398 WP_111690079.1 hypothetical protein -
  DQL47_RS04655 (NCTC12090_00932) - 979070..979363 (+) 294 WP_043983608.1 hypothetical protein -
  DQL47_RS04660 (NCTC12090_00933) - 979417..979641 (+) 225 WP_043983607.1 hypothetical protein -
  DQL47_RS04665 (NCTC12090_00934) - 979643..979900 (+) 258 WP_043983606.1 DUF6275 family protein -
  DQL47_RS04670 (NCTC12090_00935) - 979993..981408 (+) 1416 WP_111690080.1 terminase -
  DQL47_RS04675 (NCTC12090_00936) - 981483..981938 (+) 456 WP_037578498.1 phage scaffold protein -
  DQL47_RS04680 (NCTC12090_00937) - 981942..982832 (+) 891 WP_043053013.1 phage major capsid protein -
  DQL47_RS04685 (NCTC12090_00938) - 982835..983047 (+) 213 WP_043983605.1 HeH/LEM domain-containing protein -
  DQL47_RS04690 (NCTC12090_00939) - 983098..983496 (+) 399 WP_111690081.1 phage Gp19/Gp15/Gp42 family protein -
  DQL47_RS04695 (NCTC12090_00940) - 983483..983821 (+) 339 WP_111690082.1 hypothetical protein -
  DQL47_RS04700 (NCTC12090_00941) - 983814..984050 (+) 237 WP_043983604.1 hypothetical protein -
  DQL47_RS04705 (NCTC12090_00942) - 984051..984386 (+) 336 WP_043053018.1 hypothetical protein -
  DQL47_RS04710 (NCTC12090_00943) - 984403..984984 (+) 582 WP_043983603.1 hypothetical protein -
  DQL47_RS04715 (NCTC12090_00944) - 984995..985258 (+) 264 WP_043983602.1 hypothetical protein -
  DQL47_RS04720 (NCTC12090_00945) - 985273..985644 (+) 372 WP_111690084.1 DUF5361 domain-containing protein -
  DQL47_RS04725 (NCTC12090_00946) - 985644..988004 (+) 2361 WP_043983600.1 hypothetical protein -
  DQL47_RS04730 (NCTC12090_00947) - 988001..988696 (+) 696 WP_043983599.1 hypothetical protein -
  DQL47_RS04735 (NCTC12090_00948) - 988693..990639 (+) 1947 WP_111678028.1 phage tail spike protein -
  DQL47_RS04740 (NCTC12090_00949) - 990639..991322 (+) 684 WP_111690085.1 collagen-like protein -
  DQL47_RS04745 (NCTC12090_00950) - 991324..991941 (+) 618 WP_043983598.1 hypothetical protein -
  DQL47_RS04750 (NCTC12090_00951) - 991951..993816 (+) 1866 WP_043983597.1 gp58-like family protein -
  DQL47_RS04755 (NCTC12090_00952) - 993830..994015 (+) 186 WP_111678031.1 hypothetical protein -
  DQL47_RS04760 (NCTC12090_00953) - 994018..994632 (+) 615 WP_111678032.1 DUF1366 domain-containing protein -
  DQL47_RS04765 (NCTC12090_00954) - 994643..995014 (+) 372 WP_012678881.1 phage holin family protein -
  DQL47_RS04770 (NCTC12090_00956) - 995130..996326 (+) 1197 WP_043983596.1 glucosaminidase domain-containing protein -
  DQL47_RS04780 (NCTC12090_00957) - 996707..997282 (+) 576 WP_012679345.1 phospholipase A2 SlaA -
  DQL47_RS04790 (NCTC12090_00959) prx 997630..997818 (+) 189 WP_043983595.1 Paratox Regulator
  DQL47_RS04800 (NCTC12090_00961) - 998410..999021 (+) 612 WP_041785453.1 TVP38/TMEM64 family protein -
  DQL47_RS04805 (NCTC12090_00962) - 999068..999862 (-) 795 WP_012515506.1 hypothetical protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7221.23 Da        Isoelectric Point: 5.0079

>NTDB_id=1136741 DQL47_RS04790 WP_043983595.1 997630..997818(+) (prx) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MLTYDEFKQAIDHGYITGDTVAIVRKNGQIFDYVLPHESVRSWEVVTEERVEAVLKELHCIK

Nucleotide


Download         Length: 189 bp        

>NTDB_id=1136741 DQL47_RS04790 WP_043983595.1 997630..997818(+) (prx) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
GTGTTAACATACGACGAGTTTAAGCAGGCTATTGATCATGGTTATATCACAGGAGACACAGTAGCGATTGTGCGCAAAAA
CGGACAGATTTTTGATTATGTGTTGCCGCATGAGTCTGTGAGATCGTGGGAGGTTGTGACTGAAGAAAGAGTAGAAGCAG
TACTAAAAGAATTACACTGTATTAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

82.759

93.548

0.774
  prx Streptococcus pyogenes MGAS315

82.759

93.548

0.774
  prx Streptococcus pyogenes MGAS8232

81.034

93.548

0.758
  prx Streptococcus pyogenes MGAS315

74.576

95.161

0.71
  prx Streptococcus pyogenes MGAS315

88.095

67.742

0.597
  prx Streptococcus pyogenes MGAS315

85.714

67.742

0.581
  prx Streptococcus pyogenes MGAS315

80.952

67.742

0.548

Multiple sequence alignment