Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DQL47_RS00755 Genome accession   NZ_LS483328
Coordinates   130431..131465 (+) Length   344 a.a.
NCBI ID   WP_228274515.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125431..136465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS00730 (NCTC12090_00147) - 125827..126192 (+) 366 WP_012514777.1 DUF1033 family protein -
  DQL47_RS00735 - 126474..126665 (+) 192 Protein_113 lactococcin 972 family bacteriocin -
  DQL47_RS00740 (NCTC12090_00148) - 126730..128733 (+) 2004 WP_111689762.1 DUF1430 domain-containing protein -
  DQL47_RS00745 (NCTC12090_00149) - 128735..129403 (+) 669 WP_111689763.1 ATP-binding cassette domain-containing protein -
  DQL47_RS00750 (NCTC12090_00150) comGA/cglA 129560..130498 (+) 939 WP_111689764.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL47_RS00755 (NCTC12090_00151) comYB 130431..131465 (+) 1035 WP_228274515.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL47_RS00760 (NCTC12090_00152) comGC/cglC 131466..131789 (+) 324 WP_111689766.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL47_RS00765 (NCTC12090_00153) comGD 131767..132192 (+) 426 WP_111689767.1 competence type IV pilus minor pilin ComGD -
  DQL47_RS00770 comGE 132197..132439 (+) 243 WP_207622334.1 competence type IV pilus minor pilin ComGE -
  DQL47_RS00775 (NCTC12090_00154) comYF 132426..132860 (+) 435 WP_012677237.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL47_RS00780 (NCTC12090_00155) comGG 132838..133200 (+) 363 WP_037580629.1 competence type IV pilus minor pilin ComGG -
  DQL47_RS00785 (NCTC12090_00156) comYH 133262..134215 (+) 954 WP_021320264.1 class I SAM-dependent methyltransferase Machinery gene
  DQL47_RS00790 (NCTC12090_00157) - 134275..135474 (+) 1200 WP_021320265.1 acetate kinase -
  DQL47_RS00795 (NCTC12090_00158) - 135846..136460 (-) 615 WP_111689769.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39517.74 Da        Isoelectric Point: 9.3239

>NTDB_id=1136719 DQL47_RS00755 WP_228274515.1 130431..131465(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MISFLQRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLPPVYVTNMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLVFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLLLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLQQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFRKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1136719 DQL47_RS00755 WP_228274515.1 130431..131465(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGTTTTAATTTAACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGTTACCACCAGTCTATGTTACAAATATGGAAGCAAGCCTATTAAAGGGCAATGGCCTTGCTGATATGCTGGCAGCCTTA
GGCTACTCTGATGCTGTCATGACACAAATTAATCTAGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTGGTTTTTT
TAGTGGTTATCATGCTAGGTTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTTTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAGATCTTG
TAGTCGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCAGCAATATTTGACAGCTTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAGAAAGGAGCTAAGCCTAATGATTGAATATGGCGACATCAAATCAAAGCTTGGTCGGGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

55.162

98.547

0.544
  comYB Streptococcus mutans UA159

55.162

98.547

0.544
  comYB Streptococcus gordonii str. Challis substr. CH1

51.765

98.837

0.512
  comGB/cglB Streptococcus mitis NCTC 12261

48.81

97.674

0.477
  comGB/cglB Streptococcus mitis SK321

48.949

96.802

0.474
  comGB/cglB Streptococcus pneumoniae Rx1

48.649

96.802

0.471
  comGB/cglB Streptococcus pneumoniae D39

48.649

96.802

0.471
  comGB/cglB Streptococcus pneumoniae R6

48.649

96.802

0.471
  comGB/cglB Streptococcus pneumoniae TIGR4

48.649

96.802

0.471
  comGB Lactococcus lactis subsp. cremoris KW2

46.313

98.547

0.456

Multiple sequence alignment