Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   DQL47_RS00775 Genome accession   NZ_LS483328
Coordinates   132426..132860 (+) Length   144 a.a.
NCBI ID   WP_012677237.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 127426..137860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS00745 (NCTC12090_00149) - 128735..129403 (+) 669 WP_111689763.1 ATP-binding cassette domain-containing protein -
  DQL47_RS00750 (NCTC12090_00150) comGA/cglA 129560..130498 (+) 939 WP_111689764.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL47_RS00755 (NCTC12090_00151) comYB 130431..131465 (+) 1035 WP_228274515.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL47_RS00760 (NCTC12090_00152) comGC/cglC 131466..131789 (+) 324 WP_111689766.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL47_RS00765 (NCTC12090_00153) comGD 131767..132192 (+) 426 WP_111689767.1 competence type IV pilus minor pilin ComGD -
  DQL47_RS00770 comGE 132197..132439 (+) 243 WP_207622334.1 competence type IV pilus minor pilin ComGE -
  DQL47_RS00775 (NCTC12090_00154) comYF 132426..132860 (+) 435 WP_012677237.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL47_RS00780 (NCTC12090_00155) comGG 132838..133200 (+) 363 WP_037580629.1 competence type IV pilus minor pilin ComGG -
  DQL47_RS00785 (NCTC12090_00156) comYH 133262..134215 (+) 954 WP_021320264.1 class I SAM-dependent methyltransferase Machinery gene
  DQL47_RS00790 (NCTC12090_00157) - 134275..135474 (+) 1200 WP_021320265.1 acetate kinase -
  DQL47_RS00795 (NCTC12090_00158) - 135846..136460 (-) 615 WP_111689769.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16155.70 Da        Isoelectric Point: 10.1988

>NTDB_id=1136721 DQL47_RS00775 WP_012677237.1 132426..132860(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1136721 DQL47_RS00775 WP_012677237.1 132426..132860(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

52.083

100

0.521
  comYF Streptococcus mutans UA159

51.389

100

0.514
  comGF/cglF Streptococcus mitis SK321

50.365

95.139

0.479
  comGF/cglF Streptococcus mitis NCTC 12261

49.635

95.139

0.472
  comGF Lactococcus lactis subsp. cremoris KW2

47.143

97.222

0.458
  comGF/cglF Streptococcus pneumoniae D39

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae R6

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae TIGR4

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae Rx1

48.175

95.139

0.458

Multiple sequence alignment