Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL59_RS00560 Genome accession   NZ_LS483326
Coordinates   87182..87724 (+) Length   180 a.a.
NCBI ID   WP_076612468.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12045     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 88344..89412 87182..87724 flank 620


Gene organization within MGE regions


Location: 87182..89412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL59_RS00560 (NCTC12045_00114) comX/sigX/comX2/sigX2 87182..87724 (+) 543 WP_076612468.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL59_RS00565 (NCTC12045_00116) - 88344..89412 (+) 1069 Protein_74 ISAs1 family transposase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21911.66 Da        Isoelectric Point: 10.0375

>NTDB_id=1136607 DQL59_RS00560 WP_076612468.1 87182..87724(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12045]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFA

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1136607 DQL59_RS00560 WP_076612468.1 87182..87724(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12045]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTTCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.