Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DQL35_RS08730 Genome accession   NZ_LS483325
Coordinates   1810782..1811372 (-) Length   196 a.a.
NCBI ID   WP_012677455.1    Uniprot ID   A0A922T644
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC7022     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1805782..1816372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL35_RS11015 - 1805807..1805971 (+) 165 Protein_1680 ISL3 family transposase -
  DQL35_RS08695 (NCTC7022_01757) rsmI 1806125..1806991 (-) 867 WP_111678449.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DQL35_RS08700 (NCTC7022_01758) yabA 1806996..1807319 (-) 324 WP_012680029.1 DNA replication initiation control protein YabA -
  DQL35_RS08705 (NCTC7022_01759) ricT 1807312..1808112 (-) 801 WP_111678451.1 regulatory iron-sulfur-containing complex subunit RicT -
  DQL35_RS08710 (NCTC7022_01760) - 1808109..1808984 (-) 876 WP_111678453.1 DNA polymerase III subunit delta' -
  DQL35_RS08715 (NCTC7022_01761) tmk 1808998..1809633 (-) 636 WP_111678859.1 dTMP kinase -
  DQL35_RS08720 (NCTC7022_01762) - 1809948..1810232 (-) 285 WP_043053379.1 YlbG family protein -
  DQL35_RS08725 (NCTC7022_01763) - 1810233..1810679 (-) 447 WP_037579848.1 YlbF family regulator -
  DQL35_RS08730 (NCTC7022_01764) clpP 1810782..1811372 (-) 591 WP_012677455.1 ATP-dependent Clp protease proteolytic subunit Regulator
  DQL35_RS08735 (NCTC7022_01765) upp 1811604..1812233 (-) 630 WP_111678455.1 uracil phosphoribosyltransferase -
  DQL35_RS08740 (NCTC7022_01766) - 1812383..1814014 (-) 1632 WP_043031351.1 polysaccharide biosynthesis protein -
  DQL35_RS08745 (NCTC7022_01767) - 1814100..1815545 (+) 1446 WP_111678457.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21561.76 Da        Isoelectric Point: 5.0281

>NTDB_id=1136588 DQL35_RS08730 WP_012677455.1 1810782..1811372(-) (clpP) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGK
TIKQIHKDAERDYWMSAEETLAYGFIDEIMENNELA

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1136588 DQL35_RS08730 WP_012677455.1 1810782..1811372(-) (clpP) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
ATGATTCCTGTAGTTATTGAACAAACCAGTCGTGGAGAGCGTTCTTATGACATTTATTCACGTCTGTTAAAGGACCGTAT
TATCATGCTGACTGGTCCAGTAGAGGATAATATGGCAAACTCTGTTATTGCGCAGCTCTTGTTTTTAGATGCCCAAGACA
ACACAAAAGACATTTACCTCTATGTGAATACCCCAGGAGGCTCTGTATCAGCTGGTCTAGCTATTGTGGATACGATGAAC
TTTATTAAGGCAGATGTGCAAACCATTGTTATGGGTATGGCTGCCTCTATGGGAACCGTTATTGCTTCATCAGGTGCAAA
GGGCAAGCGCTTTATGCTTCCAAATGCAGAGTACATGATTCACCAGCCTATGGGAGGCACAGGTGGTGGTACACAGCAGA
CAGATATGGCCATTGCGGCTGAGCATTTATTAAAGACACGTCACCGCTTGGAAAAGATTTTGGCACAAAATGCCGGTAAA
ACGATCAAACAAATCCATAAGGACGCTGAGCGTGATTACTGGATGAGCGCAGAAGAGACCCTAGCCTATGGCTTTATTGA
TGAAATTATGGAAAATAATGAGCTAGCTTAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

99.487

99.49

0.99
  clpP Streptococcus pyogenes JRS4

99.487

99.49

0.99
  clpP Streptococcus pneumoniae Rx1

91.282

99.49

0.908
  clpP Streptococcus pneumoniae D39

91.282

99.49

0.908
  clpP Streptococcus pneumoniae R6

91.282

99.49

0.908
  clpP Streptococcus mutans UA159

91.282

99.49

0.908
  clpP Streptococcus pneumoniae TIGR4

91.282

99.49

0.908
  clpP Streptococcus thermophilus LMG 18311

89.231

99.49

0.888
  clpP Streptococcus thermophilus LMD-9

89.231

99.49

0.888
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.641

99.49

0.852
  clpP Lactococcus lactis subsp. cremoris KW2

85.128

99.49

0.847
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.513

98.469

0.566
  clpP Bacillus subtilis subsp. subtilis str. 168

57.216

98.98

0.566

Multiple sequence alignment