Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DQL35_RS00700 Genome accession   NZ_LS483325
Coordinates   121084..122118 (+) Length   344 a.a.
NCBI ID   WP_228294477.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC7022     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116084..127118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL35_RS00680 (NCTC7022_00136) - 116480..116845 (+) 366 WP_037580641.1 DUF1033 family protein -
  DQL35_RS00685 (NCTC7022_00137) - 117382..119385 (+) 2004 WP_111677647.1 DUF1430 domain-containing protein -
  DQL35_RS00690 (NCTC7022_00138) - 119387..120031 (+) 645 WP_111677648.1 ATP-binding cassette domain-containing protein -
  DQL35_RS00695 (NCTC7022_00139) comGA/cglA 120213..121151 (+) 939 WP_111678809.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL35_RS00700 (NCTC7022_00140) comYB 121084..122118 (+) 1035 WP_228294477.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL35_RS00705 (NCTC7022_00141) comGC/cglC 122119..122442 (+) 324 WP_111677650.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL35_RS00710 (NCTC7022_00142) comGD 122420..122845 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  DQL35_RS00715 comGE 122802..123092 (+) 291 WP_043030351.1 competence type IV pilus minor pilin ComGE -
  DQL35_RS00720 (NCTC7022_00143) comYF 123079..123513 (+) 435 WP_111677651.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL35_RS00725 (NCTC7022_00144) comGG 123491..123853 (+) 363 WP_111677652.1 competence type IV pilus minor pilin ComGG -
  DQL35_RS00730 (NCTC7022_00146) - 123920..125262 (+) 1343 WP_172452916.1 IS3 family transposase -
  DQL35_RS00735 (NCTC7022_00147) comYH 125347..126300 (+) 954 WP_043029264.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39496.76 Da        Isoelectric Point: 9.3195

>NTDB_id=1136551 DQL35_RS00700 WP_228294477.1 121084..122118(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MISFLQRDISIAGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLVDMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLVFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLLLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1136551 DQL35_RS00700 WP_228294477.1 121084..122118(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATAGCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGTTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTGGTTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTTTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAGATCTTG
TAGTCGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.277

98.547

0.535
  comYB Streptococcus mutans UA159

54.277

98.547

0.535
  comYB Streptococcus gordonii str. Challis substr. CH1

52.059

98.837

0.515
  comGB/cglB Streptococcus mitis NCTC 12261

48.512

97.674

0.474
  comGB/cglB Streptococcus mitis SK321

48.649

96.802

0.471
  comGB/cglB Streptococcus pneumoniae Rx1

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae D39

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae R6

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae TIGR4

47.748

96.802

0.462
  comGB Lactococcus lactis subsp. cremoris KW2

46.313

98.547

0.456

Multiple sequence alignment