Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | DQL35_RS00720 | Genome accession | NZ_LS483325 |
| Coordinates | 123079..123513 (+) | Length | 144 a.a. |
| NCBI ID | WP_111677651.1 | Uniprot ID | - |
| Organism | Streptococcus equi subsp. zooepidemicus strain NCTC7022 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 123920..125262 | 123079..123513 | flank | 407 |
Gene organization within MGE regions
Location: 123079..125262
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL35_RS00720 (NCTC7022_00143) | comYF | 123079..123513 (+) | 435 | WP_111677651.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DQL35_RS00725 (NCTC7022_00144) | comGG | 123491..123853 (+) | 363 | WP_111677652.1 | competence type IV pilus minor pilin ComGG | - |
| DQL35_RS00730 (NCTC7022_00146) | - | 123920..125262 (+) | 1343 | WP_172452916.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 16178.78 Da Isoelectric Point: 10.3341
>NTDB_id=1136553 DQL35_RS00720 WP_111677651.1 123079..123513(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGIRNNRLYVEKDK
KALSFGQVKGHDFRKAAGNGRGYQPMLFGLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGIRNNRLYVEKDK
KALSFGQVKGHDFRKAAGNGRGYQPMLFGLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG
Nucleotide
Download Length: 435 bp
>NTDB_id=1136553 DQL35_RS00720 WP_111677651.1 123079..123513(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACTAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCCTACAGGGTATCCGCAATAATAGGCTATATGTTGAAAAGGACAAG
AAGGCTTTGTCCTTTGGACAGGTCAAGGGTCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACTAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCCTACAGGGTATCCGCAATAATAGGCTATATGTTGAAAAGGACAAG
AAGGCTTTGTCCTTTGGACAGGTCAAGGGTCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
52.083 |
100 |
0.521 |
| comYF | Streptococcus mutans UA159 |
51.389 |
100 |
0.514 |
| comGF/cglF | Streptococcus mitis SK321 |
50.365 |
95.139 |
0.479 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
47.143 |
97.222 |
0.458 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
48.175 |
95.139 |
0.458 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
46.715 |
95.139 |
0.444 |
| comGF/cglF | Streptococcus pneumoniae D39 |
46.715 |
95.139 |
0.444 |
| comGF/cglF | Streptococcus pneumoniae R6 |
46.715 |
95.139 |
0.444 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
46.715 |
95.139 |
0.444 |