Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL31_RS01445 Genome accession   NZ_LS483320
Coordinates   266089..266640 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC5164     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 266792..269845 266089..266640 flank 152


Gene organization within MGE regions


Location: 266089..269845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL31_RS01445 (NCTC5164_00284) comX/sigX/comX2/sigX2 266089..266640 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL31_RS01450 (NCTC5164_00285) - 266792..267655 (-) 864 WP_032461929.1 IS982-like element ISSpy2 family transposase -
  DQL31_RS01455 (NCTC5164_00286) - 267791..268120 (+) 330 WP_111677043.1 hypothetical protein -
  DQL31_RS01460 - 268186..268545 (-) 360 Protein_227 ArpU family phage packaging/lysis transcriptional regulator -
  DQL31_RS01465 (NCTC5164_00287) - 268712..269845 (+) 1134 WP_111677044.1 ISAs1-like element IS1548 family transposase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1136294 DQL31_RS01445 WP_010921894.1 266089..266640(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC5164]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1136294 DQL31_RS01445 WP_010921894.1 266089..266640(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC5164]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCGGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATTTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.