Detailed information
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | JMV70_RS06195 | Genome accession | NZ_LR884459 |
| Coordinates | 1584850..1585971 (+) | Length | 373 a.a. |
| NCBI ID | WP_201497987.1 | Uniprot ID | - |
| Organism | Psychrobacter arenosus isolate Psychrobacter arenosus R7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1579850..1590971
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV70_RS06180 | - | 1581024..1582301 (+) | 1278 | WP_201497986.1 | hemolysin family protein | - |
| JMV70_RS06185 | - | 1582417..1583136 (-) | 720 | WP_201500012.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| JMV70_RS06190 | pilT | 1583700..1584737 (+) | 1038 | WP_201500013.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| JMV70_RS06195 | pilU | 1584850..1585971 (+) | 1122 | WP_201497987.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| JMV70_RS06200 | fur | 1586266..1586703 (-) | 438 | WP_201497988.1 | ferric iron uptake transcriptional regulator | - |
| JMV70_RS06205 | - | 1587214..1587639 (+) | 426 | WP_406947262.1 | outer membrane protein assembly factor BamE | - |
| JMV70_RS06210 | - | 1587700..1588098 (-) | 399 | WP_227676401.1 | RnfH family protein | - |
| JMV70_RS06215 | - | 1588147..1589274 (-) | 1128 | WP_201497990.1 | hypothetical protein | - |
| JMV70_RS06220 | - | 1589568..1590236 (-) | 669 | WP_201497991.1 | cytochrome c | - |
| JMV70_RS06225 | - | 1590461..1590883 (-) | 423 | WP_201497992.1 | cytochrome c5 family protein | - |
Sequence
Protein
Download Length: 373 a.a. Molecular weight: 42044.35 Da Isoelectric Point: 6.7804
>NTDB_id=1133177 JMV70_RS06195 WP_201497987.1 1584850..1585971(+) (pilU) [Psychrobacter arenosus isolate Psychrobacter arenosus R7]
MDFEKLLQLMIDNNGSDLFITTDIPPSMKINGQILPVGKTALTAEQTMTLTRNLMTPLQINEFERTNECQFAISNKDNTV
RFRVSAFIQRDHAGMVLRKIESKIPTTESLQLPPILNELAMNQRGIILLVGGTGTGKSTTLAAMTGYRNKYSRGHIISIE
DPIEFIHQHQGCIVTQREVGIDTLSFEAGLKNTLRQAPNVILIGEIRNREVMGYAIQYAETGHLVLATLHANNANQAIDR
ILHFFDTERHHQVLMDLSLNLQAIVAQQLIITTDGKRRRAAIEILINTQLISNHIRKGEIHEIKPIMTRSRDIGMQTFDQ
ALFDLFVTGEISYEEAIKHADSANDLRLRIKLETKYVVAGIEQLENSFFLSTN
MDFEKLLQLMIDNNGSDLFITTDIPPSMKINGQILPVGKTALTAEQTMTLTRNLMTPLQINEFERTNECQFAISNKDNTV
RFRVSAFIQRDHAGMVLRKIESKIPTTESLQLPPILNELAMNQRGIILLVGGTGTGKSTTLAAMTGYRNKYSRGHIISIE
DPIEFIHQHQGCIVTQREVGIDTLSFEAGLKNTLRQAPNVILIGEIRNREVMGYAIQYAETGHLVLATLHANNANQAIDR
ILHFFDTERHHQVLMDLSLNLQAIVAQQLIITTDGKRRRAAIEILINTQLISNHIRKGEIHEIKPIMTRSRDIGMQTFDQ
ALFDLFVTGEISYEEAIKHADSANDLRLRIKLETKYVVAGIEQLENSFFLSTN
Nucleotide
Download Length: 1122 bp
>NTDB_id=1133177 JMV70_RS06195 WP_201497987.1 1584850..1585971(+) (pilU) [Psychrobacter arenosus isolate Psychrobacter arenosus R7]
ATGGATTTTGAAAAACTCCTCCAACTTATGATCGATAATAATGGCTCCGATCTTTTCATCACTACCGATATACCGCCATC
GATGAAGATAAATGGTCAAATATTGCCTGTTGGTAAGACTGCATTGACTGCTGAACAGACCATGACGTTGACTCGTAACC
TGATGACGCCTTTGCAGATTAATGAATTTGAACGTACTAATGAATGTCAATTCGCTATCTCTAACAAGGATAATACAGTA
CGTTTTCGGGTGAGTGCTTTTATCCAACGTGACCATGCCGGTATGGTACTACGTAAAATTGAATCAAAAATTCCGACTAC
TGAATCGTTGCAATTACCGCCTATTTTGAATGAACTGGCTATGAATCAGCGCGGTATTATTCTATTGGTCGGTGGCACAG
GTACAGGAAAATCAACGACCTTAGCCGCTATGACGGGGTATCGTAATAAATACTCACGTGGCCATATTATTAGTATTGAA
GACCCTATTGAGTTTATTCATCAACATCAAGGCTGTATCGTGACCCAACGTGAAGTCGGTATTGATACTCTCTCTTTTGA
AGCCGGTCTTAAAAACACTTTACGCCAAGCGCCTAATGTCATTTTAATCGGAGAAATACGCAATCGTGAAGTCATGGGAT
ACGCTATTCAATATGCCGAAACAGGGCATTTGGTTTTAGCGACTTTGCATGCCAATAACGCCAACCAAGCTATCGACCGT
ATTTTGCACTTTTTTGATACTGAGCGTCATCACCAAGTATTAATGGATTTATCCTTAAACTTACAGGCTATTGTTGCTCA
GCAGCTAATCATCACTACAGATGGCAAACGGCGTAGAGCCGCTATTGAAATATTGATCAATACCCAGTTGATTAGCAATC
ATATTCGTAAAGGCGAAATCCATGAGATAAAACCTATTATGACTCGCTCTAGAGACATTGGTATGCAAACTTTCGATCAG
GCTTTATTTGATTTGTTTGTGACTGGAGAGATTAGTTACGAGGAAGCGATTAAACACGCCGATTCTGCCAATGATTTACG
TCTGCGTATTAAACTGGAAACTAAATATGTCGTGGCCGGCATTGAGCAGCTTGAAAATAGCTTTTTTCTCAGCACCAATT
AA
ATGGATTTTGAAAAACTCCTCCAACTTATGATCGATAATAATGGCTCCGATCTTTTCATCACTACCGATATACCGCCATC
GATGAAGATAAATGGTCAAATATTGCCTGTTGGTAAGACTGCATTGACTGCTGAACAGACCATGACGTTGACTCGTAACC
TGATGACGCCTTTGCAGATTAATGAATTTGAACGTACTAATGAATGTCAATTCGCTATCTCTAACAAGGATAATACAGTA
CGTTTTCGGGTGAGTGCTTTTATCCAACGTGACCATGCCGGTATGGTACTACGTAAAATTGAATCAAAAATTCCGACTAC
TGAATCGTTGCAATTACCGCCTATTTTGAATGAACTGGCTATGAATCAGCGCGGTATTATTCTATTGGTCGGTGGCACAG
GTACAGGAAAATCAACGACCTTAGCCGCTATGACGGGGTATCGTAATAAATACTCACGTGGCCATATTATTAGTATTGAA
GACCCTATTGAGTTTATTCATCAACATCAAGGCTGTATCGTGACCCAACGTGAAGTCGGTATTGATACTCTCTCTTTTGA
AGCCGGTCTTAAAAACACTTTACGCCAAGCGCCTAATGTCATTTTAATCGGAGAAATACGCAATCGTGAAGTCATGGGAT
ACGCTATTCAATATGCCGAAACAGGGCATTTGGTTTTAGCGACTTTGCATGCCAATAACGCCAACCAAGCTATCGACCGT
ATTTTGCACTTTTTTGATACTGAGCGTCATCACCAAGTATTAATGGATTTATCCTTAAACTTACAGGCTATTGTTGCTCA
GCAGCTAATCATCACTACAGATGGCAAACGGCGTAGAGCCGCTATTGAAATATTGATCAATACCCAGTTGATTAGCAATC
ATATTCGTAAAGGCGAAATCCATGAGATAAAACCTATTATGACTCGCTCTAGAGACATTGGTATGCAAACTTTCGATCAG
GCTTTATTTGATTTGTTTGTGACTGGAGAGATTAGTTACGAGGAAGCGATTAAACACGCCGATTCTGCCAATGATTTACG
TCTGCGTATTAAACTGGAAACTAAATATGTCGTGGCCGGCATTGAGCAGCTTGAAAATAGCTTTTTTCTCAGCACCAATT
AA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
66.479 |
95.174 |
0.633 |
| pilU | Acinetobacter baylyi ADP1 |
64.205 |
94.37 |
0.606 |
| pilU | Vibrio cholerae strain A1552 |
52.422 |
94.102 |
0.493 |
| pilT | Legionella pneumophila strain Lp02 |
42.154 |
87.131 |
0.367 |
| pilT | Legionella pneumophila strain ERS1305867 |
42.154 |
87.131 |
0.367 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40 |
91.153 |
0.365 |