Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilU   Type   Machinery gene
Locus tag   JMV70_RS06195 Genome accession   NZ_LR884459
Coordinates   1584850..1585971 (+) Length   373 a.a.
NCBI ID   WP_201497987.1    Uniprot ID   -
Organism   Psychrobacter arenosus isolate Psychrobacter arenosus R7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1579850..1590971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV70_RS06180 - 1581024..1582301 (+) 1278 WP_201497986.1 hemolysin family protein -
  JMV70_RS06185 - 1582417..1583136 (-) 720 WP_201500012.1 YggS family pyridoxal phosphate-dependent enzyme -
  JMV70_RS06190 pilT 1583700..1584737 (+) 1038 WP_201500013.1 type IV pilus twitching motility protein PilT Machinery gene
  JMV70_RS06195 pilU 1584850..1585971 (+) 1122 WP_201497987.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  JMV70_RS06200 fur 1586266..1586703 (-) 438 WP_201497988.1 ferric iron uptake transcriptional regulator -
  JMV70_RS06205 - 1587214..1587639 (+) 426 WP_406947262.1 outer membrane protein assembly factor BamE -
  JMV70_RS06210 - 1587700..1588098 (-) 399 WP_227676401.1 RnfH family protein -
  JMV70_RS06215 - 1588147..1589274 (-) 1128 WP_201497990.1 hypothetical protein -
  JMV70_RS06220 - 1589568..1590236 (-) 669 WP_201497991.1 cytochrome c -
  JMV70_RS06225 - 1590461..1590883 (-) 423 WP_201497992.1 cytochrome c5 family protein -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 42044.35 Da        Isoelectric Point: 6.7804

>NTDB_id=1133177 JMV70_RS06195 WP_201497987.1 1584850..1585971(+) (pilU) [Psychrobacter arenosus isolate Psychrobacter arenosus R7]
MDFEKLLQLMIDNNGSDLFITTDIPPSMKINGQILPVGKTALTAEQTMTLTRNLMTPLQINEFERTNECQFAISNKDNTV
RFRVSAFIQRDHAGMVLRKIESKIPTTESLQLPPILNELAMNQRGIILLVGGTGTGKSTTLAAMTGYRNKYSRGHIISIE
DPIEFIHQHQGCIVTQREVGIDTLSFEAGLKNTLRQAPNVILIGEIRNREVMGYAIQYAETGHLVLATLHANNANQAIDR
ILHFFDTERHHQVLMDLSLNLQAIVAQQLIITTDGKRRRAAIEILINTQLISNHIRKGEIHEIKPIMTRSRDIGMQTFDQ
ALFDLFVTGEISYEEAIKHADSANDLRLRIKLETKYVVAGIEQLENSFFLSTN

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=1133177 JMV70_RS06195 WP_201497987.1 1584850..1585971(+) (pilU) [Psychrobacter arenosus isolate Psychrobacter arenosus R7]
ATGGATTTTGAAAAACTCCTCCAACTTATGATCGATAATAATGGCTCCGATCTTTTCATCACTACCGATATACCGCCATC
GATGAAGATAAATGGTCAAATATTGCCTGTTGGTAAGACTGCATTGACTGCTGAACAGACCATGACGTTGACTCGTAACC
TGATGACGCCTTTGCAGATTAATGAATTTGAACGTACTAATGAATGTCAATTCGCTATCTCTAACAAGGATAATACAGTA
CGTTTTCGGGTGAGTGCTTTTATCCAACGTGACCATGCCGGTATGGTACTACGTAAAATTGAATCAAAAATTCCGACTAC
TGAATCGTTGCAATTACCGCCTATTTTGAATGAACTGGCTATGAATCAGCGCGGTATTATTCTATTGGTCGGTGGCACAG
GTACAGGAAAATCAACGACCTTAGCCGCTATGACGGGGTATCGTAATAAATACTCACGTGGCCATATTATTAGTATTGAA
GACCCTATTGAGTTTATTCATCAACATCAAGGCTGTATCGTGACCCAACGTGAAGTCGGTATTGATACTCTCTCTTTTGA
AGCCGGTCTTAAAAACACTTTACGCCAAGCGCCTAATGTCATTTTAATCGGAGAAATACGCAATCGTGAAGTCATGGGAT
ACGCTATTCAATATGCCGAAACAGGGCATTTGGTTTTAGCGACTTTGCATGCCAATAACGCCAACCAAGCTATCGACCGT
ATTTTGCACTTTTTTGATACTGAGCGTCATCACCAAGTATTAATGGATTTATCCTTAAACTTACAGGCTATTGTTGCTCA
GCAGCTAATCATCACTACAGATGGCAAACGGCGTAGAGCCGCTATTGAAATATTGATCAATACCCAGTTGATTAGCAATC
ATATTCGTAAAGGCGAAATCCATGAGATAAAACCTATTATGACTCGCTCTAGAGACATTGGTATGCAAACTTTCGATCAG
GCTTTATTTGATTTGTTTGTGACTGGAGAGATTAGTTACGAGGAAGCGATTAAACACGCCGATTCTGCCAATGATTTACG
TCTGCGTATTAAACTGGAAACTAAATATGTCGTGGCCGGCATTGAGCAGCTTGAAAATAGCTTTTTTCTCAGCACCAATT
AA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

66.479

95.174

0.633

  pilU Acinetobacter baylyi ADP1

64.205

94.37

0.606

  pilU Vibrio cholerae strain A1552

52.422

94.102

0.493

  pilT Legionella pneumophila strain Lp02

42.154

87.131

0.367

  pilT Legionella pneumophila strain ERS1305867

42.154

87.131

0.367

  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40

91.153

0.365


Multiple sequence alignment