Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   H1X04_RS08520 Genome accession   NZ_LR822043
Coordinates   1648235..1649335 (-) Length   366 a.a.
NCBI ID   WP_148148900.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_2101     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1643235..1654335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X04_RS08480 (STHERMO_1884) - 1643847..1644044 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  H1X04_RS08485 (STHERMO_1885) - 1644293..1645486 (-) 1194 WP_022096898.1 acetate kinase -
  H1X04_RS08490 (STHERMO_1886) comYH 1645542..1646498 (-) 957 WP_180480160.1 class I SAM-dependent methyltransferase Machinery gene
  H1X04_RS08495 (STHERMO_1887) comGG 1646543..1646860 (-) 318 WP_011226623.1 competence type IV pilus minor pilin ComGG -
  H1X04_RS08500 (STHERMO_1888) comYF 1646838..1647275 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1X04_RS08505 (STHERMO_1889) comGE 1647259..1647552 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  H1X04_RS08510 (STHERMO_1890) comYD 1647524..1647952 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1X04_RS08515 (STHERMO_1891) comYC 1647912..1648238 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1X04_RS08520 (STHERMO_1892) comYB 1648235..1649335 (-) 1101 WP_148148900.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1X04_RS08525 (STHERMO_1893) comGA/cglA/cilD 1649217..1650158 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  H1X04_RS08530 (STHERMO_1894) - 1650239..1650601 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41754.88 Da        Isoelectric Point: 10.0449

>NTDB_id=1132208 H1X04_RS08520 WP_148148900.1 1648235..1649335(-) (comYB) [Streptococcus thermophilus isolate STH_CIRM_2101]
MPEKISKTIRLPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKEASLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1132208 H1X04_RS08520 WP_148148900.1 1648235..1649335(-) (comYB) [Streptococcus thermophilus isolate STH_CIRM_2101]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCTACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAGCATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCAGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGATATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.678

93.443

0.511
  comYB Streptococcus mutans UA159

54.678

93.443

0.511
  comYB Streptococcus gordonii str. Challis substr. CH1

51.17

93.443

0.478
  comGB/cglB Streptococcus mitis NCTC 12261

50.453

90.437

0.456
  comGB/cglB Streptococcus mitis SK321

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae Rx1

49.394

90.164

0.445
  comGB/cglB Streptococcus pneumoniae D39

49.394

90.164

0.445
  comGB/cglB Streptococcus pneumoniae R6

49.394

90.164

0.445
  comGB/cglB Streptococcus pneumoniae TIGR4

49.394

90.164

0.445
  comGB Lactococcus lactis subsp. cremoris KW2

45.758

90.164

0.413

Multiple sequence alignment