Detailed information NTG1132205

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: H1X04_RS08500
• Genome accession: NZ_LR822043
• Coordinates: 1646838..1647275 (-)
• Length: 145 a.a.
• NCBI ID: WP_014608742.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_2101
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1641838..1652275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1X04_RS08465 (STHERMO_1879)	-	1641892..1642554 (-)	663	WP_179971686.1	CPBP family intramembrane glutamic endopeptidase	-
H1X04_RS08470 (STHERMO_1881)	-	1642657..1643105 (-)	449	Protein_1611	CAAX protease	-
H1X04_RS09795 (STHERMO_1882)	-	1643179..1643604 (-)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
H1X04_RS08480 (STHERMO_1884)	-	1643847..1644044 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
H1X04_RS08485 (STHERMO_1885)	-	1644293..1645486 (-)	1194	WP_022096898.1	acetate kinase	-
H1X04_RS08490 (STHERMO_1886)	comYH	1645542..1646498 (-)	957	WP_180480160.1	class I SAM-dependent methyltransferase	Machinery gene
H1X04_RS08495 (STHERMO_1887)	comGG	1646543..1646860 (-)	318	WP_011226623.1	competence type IV pilus minor pilin ComGG	-
H1X04_RS08500 (STHERMO_1888)	comYF	1646838..1647275 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1X04_RS08505 (STHERMO_1889)	comGE	1647259..1647552 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
H1X04_RS08510 (STHERMO_1890)	comYD	1647524..1647952 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
H1X04_RS08515 (STHERMO_1891)	comYC	1647912..1648238 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
H1X04_RS08520 (STHERMO_1892)	comYB	1648235..1649335 (-)	1101	WP_148148900.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1X04_RS08525 (STHERMO_1893)	comGA/cglA/cilD	1649217..1650158 (-)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
H1X04_RS08530 (STHERMO_1894)	-	1650239..1650601 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16505.05 Da
• Isoelectric Point: 8.9784

>NTDB_id=1132205 H1X04_RS08500 WP_014608742.1 1646838..1647275(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_2101]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEWNKLYVKKD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=1132205 H1X04_RS08500 WP_014608742.1 1646838..1647275(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_2101]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGTGGAACAAACTCTATGTCAAGAAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.865	97.241	0.572
comYF	Streptococcus mutans UA159	58.156	97.241	0.566
comGF/cglF	Streptococcus pneumoniae D39	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae Rx1	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae R6	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae TIGR4	47.857	96.552	0.462
comGF/cglF	Streptococcus mitis NCTC 12261	46.099	97.241	0.448
comGF/cglF	Streptococcus mitis SK321	45.39	97.241	0.441
comGF	Lactococcus lactis subsp. cremoris KW2	46.043	95.862	0.441