Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H1X04_RS08490 Genome accession   NZ_LR822043
Coordinates   1645542..1646498 (-) Length   318 a.a.
NCBI ID   WP_180480160.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_2101     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1640542..1651498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X04_RS08460 (STHERMO_1878) proC 1641092..1641862 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  H1X04_RS08465 (STHERMO_1879) - 1641892..1642554 (-) 663 WP_179971686.1 CPBP family intramembrane glutamic endopeptidase -
  H1X04_RS08470 (STHERMO_1881) - 1642657..1643105 (-) 449 Protein_1611 CAAX protease -
  H1X04_RS09795 (STHERMO_1882) - 1643179..1643604 (-) 426 WP_041827107.1 CPBP family intramembrane glutamic endopeptidase -
  H1X04_RS08480 (STHERMO_1884) - 1643847..1644044 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  H1X04_RS08485 (STHERMO_1885) - 1644293..1645486 (-) 1194 WP_022096898.1 acetate kinase -
  H1X04_RS08490 (STHERMO_1886) comYH 1645542..1646498 (-) 957 WP_180480160.1 class I SAM-dependent methyltransferase Machinery gene
  H1X04_RS08495 (STHERMO_1887) comGG 1646543..1646860 (-) 318 WP_011226623.1 competence type IV pilus minor pilin ComGG -
  H1X04_RS08500 (STHERMO_1888) comYF 1646838..1647275 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1X04_RS08505 (STHERMO_1889) comGE 1647259..1647552 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  H1X04_RS08510 (STHERMO_1890) comYD 1647524..1647952 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1X04_RS08515 (STHERMO_1891) comYC 1647912..1648238 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1X04_RS08520 (STHERMO_1892) comYB 1648235..1649335 (-) 1101 WP_148148900.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1X04_RS08525 (STHERMO_1893) comGA/cglA/cilD 1649217..1650158 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  H1X04_RS08530 (STHERMO_1894) - 1650239..1650601 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35885.06 Da        Isoelectric Point: 4.7123

>NTDB_id=1132204 H1X04_RS08490 WP_180480160.1 1645542..1646498(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_2101]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAVTGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1132204 H1X04_RS08490 WP_180480160.1 1645542..1646498(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_2101]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGTAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.571

99.057

0.679
  comYH Streptococcus mutans UA140

68.571

99.057

0.679

Multiple sequence alignment