Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   H1X38_RS03875 Genome accession   NZ_LR822035
Coordinates   736366..736527 (-) Length   53 a.a.
NCBI ID   WP_014727422.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1051     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 715598..744281 736366..736527 within 0


Gene organization within MGE regions


Location: 715598..744281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X38_RS03790 (STHERMO_0798) - 715598..716188 (+) 591 WP_011227082.1 thymidine kinase -
  H1X38_RS03795 (STHERMO_0799) prfA 716231..717310 (+) 1080 WP_002948472.1 peptide chain release factor 1 -
  H1X38_RS03800 (STHERMO_0800) prmC 717307..718140 (+) 834 WP_011681016.1 peptide chain release factor N(5)-glutamine methyltransferase -
  H1X38_RS03805 (STHERMO_0801) - 718127..718732 (+) 606 WP_002948474.1 L-threonylcarbamoyladenylate synthase -
  H1X38_RS03810 (STHERMO_0802) glyA 718827..720077 (+) 1251 WP_014727417.1 serine hydroxymethyltransferase -
  H1X38_RS03815 (STHERMO_0803) - 720084..721061 (+) 978 WP_014608183.1 nucleoid-associated protein -
  H1X38_RS03820 (STHERMO_0804) - 721063..721674 (+) 612 WP_041827329.1 lysozyme family protein -
  H1X38_RS03825 (STHERMO_0805) - 721707..723446 (+) 1740 WP_011681019.1 ABC transporter ATP-binding protein -
  H1X38_RS03830 (STHERMO_0806) - 723436..725184 (+) 1749 WP_011681020.1 ABC transporter ATP-binding protein -
  H1X38_RS03835 - 725362..725493 (+) 132 WP_002885174.1 teichoic acid D-Ala incorporation-associated protein DltX -
  H1X38_RS03840 (STHERMO_0808) dltA 725502..727052 (+) 1551 WP_011681022.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  H1X38_RS03845 (STHERMO_0809) dltB 727049..728296 (+) 1248 WP_014608186.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  H1X38_RS03850 (STHERMO_0810) dltC 728314..728553 (+) 240 WP_002950439.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  H1X38_RS03855 (STHERMO_0811) dltD 728546..729814 (+) 1269 WP_011681024.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  H1X38_RS03860 - 729867..731216 (-) 1350 Protein_708 IS3 family transposase -
  H1X38_RS03865 (STHERMO_0817) - 731415..734051 (-) 2637 WP_014727421.1 calcium-translocating P-type ATPase, PMCA-type -
  H1X38_RS03870 (STHERMO_0818) pabB 734228..735946 (-) 1719 WP_014608193.1 aminodeoxychorismate synthase component I -
  H1X38_RS03875 (STHERMO_0819) prx 736366..736527 (-) 162 WP_014727422.1 hypothetical protein Regulator
  H1X38_RS03880 (STHERMO_0821) - 737011..737286 (-) 276 WP_014727423.1 hypothetical protein -
  H1X38_RS03885 (STHERMO_0822) - 737303..737485 (-) 183 WP_014727424.1 hypothetical protein -
  H1X38_RS03890 (STHERMO_0823) - 737814..738887 (-) 1074 WP_014727425.1 VapE domain-containing protein -
  H1X38_RS03895 (STHERMO_0824) - 739223..740080 (-) 858 WP_014727426.1 primase alpha helix C-terminal domain-containing protein -
  H1X38_RS03900 (STHERMO_0825) - 740095..740367 (-) 273 WP_011227098.1 MerR family transcriptional regulator -
  H1X38_RS03905 (STHERMO_0826) - 740369..740710 (-) 342 WP_224102964.1 hypothetical protein -
  H1X38_RS03910 (STHERMO_0827) - 740697..740933 (-) 237 WP_014727428.1 hypothetical protein -
  H1X38_RS03915 (STHERMO_0828) - 740947..741141 (-) 195 WP_014727429.1 hypothetical protein -
  H1X38_RS03920 (STHERMO_0829) - 741145..741450 (-) 306 WP_014727430.1 hypothetical protein -
  H1X38_RS03925 (STHERMO_0830) - 741670..741867 (-) 198 WP_014727431.1 helix-turn-helix domain-containing protein -
  H1X38_RS03930 (STHERMO_0831) - 742030..742548 (+) 519 WP_002948197.1 helix-turn-helix transcriptional regulator -
  H1X38_RS03935 (STHERMO_0832) - 742664..743830 (+) 1167 WP_014727432.1 tyrosine-type recombinase/integrase -
  H1X38_RS03940 (STHERMO_0833) - 743946..744281 (+) 336 WP_011225805.1 hypothetical protein -

Sequence

Protein


Download         Length: 53 a.a.        Molecular weight: 6084.95 Da        Isoelectric Point: 4.2412

>NTDB_id=1131764 H1X38_RS03875 WP_014727422.1 736366..736527(-) (prx) [Streptococcus thermophilus isolate STH_CIRM_1051]
MLTYDEFKEAMDKGFIKGDTVQIVRLDGEQVEPREILSLEKVSDIIKELGKDN

Nucleotide


Download         Length: 162 bp        

>NTDB_id=1131764 H1X38_RS03875 WP_014727422.1 736366..736527(-) (prx) [Streptococcus thermophilus isolate STH_CIRM_1051]
ATGCTGACTTATGATGAATTTAAAGAGGCAATGGACAAGGGTTTTATTAAAGGTGATACTGTCCAGATTGTCCGATTAGA
CGGTGAACAAGTTGAGCCACGCGAAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAGGAACTAGGCAAGGACAACT
AA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

48.333

100

0.547
  prx Streptococcus pyogenes MGAS315

46.667

100

0.528
  prx Streptococcus pyogenes MGAS315

46.667

100

0.528
  prx Streptococcus pyogenes MGAS315

45

100

0.509
  prx Streptococcus pyogenes MGAS315

56.818

83.019

0.472
  prx Streptococcus pyogenes MGAS315

57.143

79.245

0.453
  prx Streptococcus pyogenes MGAS315

60.526

71.698

0.434

Multiple sequence alignment