Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   H1W98_RS07080 Genome accession   NZ_LR822026
Coordinates   1362863..1364839 (-) Length   658 a.a.
NCBI ID   WP_180482511.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_967     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1357863..1369839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W98_RS07060 (STHERMO_1606) amiF 1358364..1359290 (-) 927 WP_179972088.1 ATP-binding cassette domain-containing protein Regulator
  H1W98_RS07065 (STHERMO_1607) amiE 1359283..1360368 (-) 1086 WP_179972089.1 ABC transporter ATP-binding protein Regulator
  H1W98_RS07070 (STHERMO_1608) amiD 1360378..1361304 (-) 927 WP_180482512.1 oligopeptide ABC transporter permease OppC Regulator
  H1W98_RS07075 (STHERMO_1609) amiC 1361304..1362797 (-) 1494 WP_164135541.1 ABC transporter permease Regulator
  H1W98_RS07080 (STHERMO_1610) amiA3 1362863..1364839 (-) 1977 WP_180482511.1 peptide ABC transporter substrate-binding protein Regulator
  H1W98_RS07085 (STHERMO_1611) - 1365074..1365263 (-) 190 Protein_1338 IS3 family transposase -
  H1W98_RS11230 (STHERMO_1613) - 1365260..1365684 (-) 425 Protein_1339 ATP-binding cassette domain-containing protein -
  H1W98_RS11235 - 1365724..1366173 (-) 450 Protein_1340 TatD family hydrolase -
  H1W98_RS07100 (STHERMO_1615) - 1366484..1367689 (+) 1206 WP_180482510.1 OFA family MFS transporter -
  H1W98_RS07105 - 1367738..1368857 (-) 1120 Protein_1342 IS3 family transposase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72413.63 Da        Isoelectric Point: 6.1419

>NTDB_id=1131293 H1W98_RS07080 WP_180482511.1 1362863..1364839(-) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_967]
MKKSKWLALAGVALLGVGVLTACSSKSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPS
VAEDWSVSKDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVG
VKAIDDYTLQYTLRRPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWD
KKNVHFDAIKLSYYDGSDQDALVRGFTDGAYNIARVFPTSSNYASVEKKYKDNIYYTAPGASTSAIGINIDRQSYKYTAK
KTDSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLGVRNLFVPSDFVSAGDKTFGDLVTNKMSSYGDEWSGV
NFADNQDGLYNAEKAKTEFAKAKDALKADGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGKDNVVIDINQLSSDDL
QNATLNAANAAAEDWDISNGVIWAPDYQDPSTYLDIFKTTSSESTKTFMGYDDPNNAAAVQVGLKDYDALLNSAASETSD
LNVRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLKPFTGASIQVGDKNSSDYLKYVKPQEKVVTKKEYEQSREKWLK
EKKESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1131293 H1W98_RS07080 WP_180482511.1 1362863..1364839(-) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAACGGCTTGTTCATCTAAATC
TAAATCAAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATA
CGGGACCTACAAAAACTGCTGTGACAAATGGCGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCA
GTAGCTGAAGATTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGGTCAAATGGTATACTTC
TGATGGTGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTTACGGGTCTTAAACATGCTGCGGACTCCAAAGCAGGTG
GTATCTATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGT
GTCAAGGCAATTGATGACTATACTTTGCAGTACACGCTTAGGCGACCAGAACCATACTGGAACTCTAAGACAACTTATGG
TTTGCTTTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCC
TTTATAATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGAC
AAGAAAAATGTACACTTTGATGCTATCAAATTATCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCAC
TGATGGTGCTTATAATATTGCTCGTGTCTTTCCAACGAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATA
TTTATTACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAA
AAGACGGATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGA
CCGTAAGGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGGTGTTCGTAACCTCTTTGTGCCTTCTGATT
TTGTGAGTGCAGGTGATAAGACCTTCGGAGATCTTGTAACGAATAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTG
AATTTTGCTGATAATCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCAA
AGCAGATGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTGACCAAAGTTCTAAACTTAATGTTGCCCAAGCCCAAT
CTTTGAAACAAACCATTGAAAAATCATTGGGAAAGGACAATGTGGTGATTGATATTAACCAATTGTCATCTGATGATTTG
CAAAATGCAACCCTTAATGCCGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATGGTGTCATTTGGGCGCCAGATTA
CCAAGATCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAGCACTAAGACTTTCATGGGTTATGATGATC
CAAATAATGCGGCAGCAGTCCAAGTAGGACTCAAAGACTATGATGCCTTGCTTAATTCTGCAGCTTCAGAAACAAGTGAC
CTTAATGTTCGTTATGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGG
TAATGGTGCGGCACCAGTTATCTCACGCTTGAAACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAG
ACTACTTAAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAA
GAAAAGAAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

95.296

100

0.954
  amiA3 Streptococcus thermophilus LMG 18311

95.144

100

0.953
  amiA Streptococcus salivarius strain HSISS4

90.729

100

0.907

Multiple sequence alignment