Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H1W98_RS07060 Genome accession   NZ_LR822026
Coordinates   1358364..1359290 (-) Length   308 a.a.
NCBI ID   WP_179972088.1    Uniprot ID   A0A7U7C4F3
Organism   Streptococcus thermophilus isolate STH_CIRM_967     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1353364..1364290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W98_RS07035 (STHERMO_1600) - 1354645..1355460 (-) 816 WP_180482516.1 Cof-type HAD-IIB family hydrolase -
  H1W98_RS07040 (STHERMO_1601) - 1355453..1356247 (-) 795 WP_180482515.1 HAD-IIB family hydrolase -
  H1W98_RS07045 (STHERMO_1602) - 1356432..1356809 (+) 378 WP_180482514.1 GntR family transcriptional regulator -
  H1W98_RS07050 (STHERMO_1603) - 1356814..1357514 (+) 701 Protein_1331 ABC transporter ATP-binding protein -
  H1W98_RS07055 (STHERMO_1605) - 1357526..1358311 (+) 786 WP_180482513.1 ABC transporter permease -
  H1W98_RS07060 (STHERMO_1606) amiF 1358364..1359290 (-) 927 WP_179972088.1 ATP-binding cassette domain-containing protein Regulator
  H1W98_RS07065 (STHERMO_1607) amiE 1359283..1360368 (-) 1086 WP_179972089.1 ABC transporter ATP-binding protein Regulator
  H1W98_RS07070 (STHERMO_1608) amiD 1360378..1361304 (-) 927 WP_180482512.1 oligopeptide ABC transporter permease OppC Regulator
  H1W98_RS07075 (STHERMO_1609) amiC 1361304..1362797 (-) 1494 WP_164135541.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 35038.09 Da        Isoelectric Point: 6.3519

>NTDB_id=1131289 H1W98_RS07060 WP_179972088.1 1358364..1359290(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_967]
MPEKLVEVKDLEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYHKEQS

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1131289 H1W98_RS07060 WP_179972088.1 1358364..1359290(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATCTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCTCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATTGGACGTG
CCATTATTGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCATTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGATCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATTCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATATTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGTCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCATAAAGAACAAAGTTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7C4F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.351

100

0.994
  amiF Streptococcus thermophilus LMD-9

99.026

100

0.99
  amiF Streptococcus salivarius strain HSISS4

97.403

100

0.974

Multiple sequence alignment