Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H1W98_RS07075 Genome accession   NZ_LR822026
Coordinates   1361304..1362797 (-) Length   497 a.a.
NCBI ID   WP_164135541.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_967     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1356304..1367797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W98_RS07045 (STHERMO_1602) - 1356432..1356809 (+) 378 WP_180482514.1 GntR family transcriptional regulator -
  H1W98_RS07050 (STHERMO_1603) - 1356814..1357514 (+) 701 Protein_1331 ABC transporter ATP-binding protein -
  H1W98_RS07055 (STHERMO_1605) - 1357526..1358311 (+) 786 WP_180482513.1 ABC transporter permease -
  H1W98_RS07060 (STHERMO_1606) amiF 1358364..1359290 (-) 927 WP_179972088.1 ATP-binding cassette domain-containing protein Regulator
  H1W98_RS07065 (STHERMO_1607) amiE 1359283..1360368 (-) 1086 WP_179972089.1 ABC transporter ATP-binding protein Regulator
  H1W98_RS07070 (STHERMO_1608) amiD 1360378..1361304 (-) 927 WP_180482512.1 oligopeptide ABC transporter permease OppC Regulator
  H1W98_RS07075 (STHERMO_1609) amiC 1361304..1362797 (-) 1494 WP_164135541.1 ABC transporter permease Regulator
  H1W98_RS07080 (STHERMO_1610) amiA3 1362863..1364839 (-) 1977 WP_180482511.1 peptide ABC transporter substrate-binding protein Regulator
  H1W98_RS07085 (STHERMO_1611) - 1365074..1365263 (-) 190 Protein_1338 IS3 family transposase -
  H1W98_RS11230 (STHERMO_1613) - 1365260..1365684 (-) 425 Protein_1339 ATP-binding cassette domain-containing protein -
  H1W98_RS11235 - 1365724..1366173 (-) 450 Protein_1340 TatD family hydrolase -
  H1W98_RS07100 (STHERMO_1615) - 1366484..1367689 (+) 1206 WP_180482510.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55816.60 Da        Isoelectric Point: 10.0391

>NTDB_id=1131292 H1W98_RS07075 WP_164135541.1 1361304..1362797(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_967]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRHLIFRQDPNYNKIAKTADSKTNYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKRISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKNRYQDPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGIL
TFLLSLPTIALVYIIRLMGSAIGLPDSFPILGAGDWRSYVLPSVILGILSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1131292 H1W98_RS07075 WP_164135541.1 1361304..1362797(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGAAAAGATACATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACAGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCATCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
CAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCAGTTGTTGGTTCAGGAACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAGAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCCAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAATCGTTATCAGGACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGTATCCTG
ACTTTCTTGCTTTCTCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATGGGTTCTGCGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCTTATGTCTTGCCATCTGTTATTCTCGGAATCTTGTCAACTCCTGGTC
TTGCGATTTGGATCCGCCGTTACATGATTGATTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGATTGTCA
GAACAAGAAATTTCAAACAAGCACATTTTCAAGAATGCTATGGTTTCCTTGGTTTCAGGAATTCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGTCTGGTATTTATTTTTACAGCCCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

95.171

100

0.952
  amiC Streptococcus thermophilus LMD-9

94.97

100

0.95
  amiC Streptococcus thermophilus LMG 18311

94.97

100

0.95

Multiple sequence alignment