Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H1W98_RS07065 Genome accession   NZ_LR822026
Coordinates   1359283..1360368 (-) Length   361 a.a.
NCBI ID   WP_179972089.1    Uniprot ID   A0A7U7H1Q5
Organism   Streptococcus thermophilus isolate STH_CIRM_967     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1354283..1365368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W98_RS07035 (STHERMO_1600) - 1354645..1355460 (-) 816 WP_180482516.1 Cof-type HAD-IIB family hydrolase -
  H1W98_RS07040 (STHERMO_1601) - 1355453..1356247 (-) 795 WP_180482515.1 HAD-IIB family hydrolase -
  H1W98_RS07045 (STHERMO_1602) - 1356432..1356809 (+) 378 WP_180482514.1 GntR family transcriptional regulator -
  H1W98_RS07050 (STHERMO_1603) - 1356814..1357514 (+) 701 Protein_1331 ABC transporter ATP-binding protein -
  H1W98_RS07055 (STHERMO_1605) - 1357526..1358311 (+) 786 WP_180482513.1 ABC transporter permease -
  H1W98_RS07060 (STHERMO_1606) amiF 1358364..1359290 (-) 927 WP_179972088.1 ATP-binding cassette domain-containing protein Regulator
  H1W98_RS07065 (STHERMO_1607) amiE 1359283..1360368 (-) 1086 WP_179972089.1 ABC transporter ATP-binding protein Regulator
  H1W98_RS07070 (STHERMO_1608) amiD 1360378..1361304 (-) 927 WP_180482512.1 oligopeptide ABC transporter permease OppC Regulator
  H1W98_RS07075 (STHERMO_1609) amiC 1361304..1362797 (-) 1494 WP_164135541.1 ABC transporter permease Regulator
  H1W98_RS07080 (STHERMO_1610) amiA3 1362863..1364839 (-) 1977 WP_180482511.1 peptide ABC transporter substrate-binding protein Regulator
  H1W98_RS07085 (STHERMO_1611) - 1365074..1365263 (-) 190 Protein_1338 IS3 family transposase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39922.75 Da        Isoelectric Point: 4.8890

>NTDB_id=1131290 H1W98_RS07065 WP_179972089.1 1359283..1360368(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_967]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGKDL
TKFKSHKDWAAIRGAKIATIFQDPMTSLDPIKTIGSQIIEVIVKHQGKTAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGKLFSIPGTPPSLYTPVVGDAFALRSDYALQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVDKPAVIQNLHEKIRANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=1131290 H1W98_RS07065 WP_179972089.1 1359283..1360368(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGAGTTTCTCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGAAAATCAGTCT
TGACTAAAACTTTTACAGGGATGCTGGAAGAAAATGGGCGTGTAGCTAGCGGATCTATTGACTACCGTGGCAAAGACTTG
ACTAAATTTAAGAGTCACAAAGATTGGGCAGCTATCCGTGGAGCTAAGATTGCAACTATTTTCCAAGATCCGATGACCAG
TCTTGACCCAATTAAGACTATCGGAAGTCAAATTATTGAAGTTATTGTTAAGCACCAAGGGAAAACAGCCAAGGAAGCTA
AAAAAATGGCGATTGATTACATGGACAAGGTTGGTATTCCGGATGCTGAAAAACGTTTCAATGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATTATTGACCTCTTGAAATCACTCAAAGAGGAGTATGGTTTCTCGGTCA
TTTTCATTACCCATGACCTTGGTGTCGTAGCAAGTATCGCGGACAAGGTTGCTGTCATGTATGCTGGCGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTACTTTCAAGTCTGCCACAATTGGC
TGATGATAAGGGAAAACTCTTCTCAATTCCAGGGACCCCACCATCACTTTATACACCAGTTGTTGGGGATGCCTTTGCCT
TGCGTTCAGATTATGCTTTGCAGATTGATTTTGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCGCCAAAAGTTGATAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCGAGCCAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7H1Q5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

98.892

100

0.989
  amiE Streptococcus thermophilus LMD-9

98.892

100

0.989
  amiE Streptococcus salivarius strain HSISS4

97.507

100

0.975
  oppD Streptococcus mutans UA159

54.728

96.676

0.529

Multiple sequence alignment